Mercurial > repos > chmaramis > irprofiler
view test-data/clono_compute_def1_BCR_input1.csv @ 1:acaa8e8a0b88 draft default tip
Uploaded test-data & added tool help
| author | chmaramis |
|---|---|
| date | Mon, 30 Apr 2018 04:47:52 -0400 |
| parents | |
| children |
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Sequence ID Functionality V-GENE V-REGION score V-REGION identity % V-REGION identity nt V-REGION identity % (with ins/del events) V-REGION identity nt (with ins/del events) J-GENE J-REGION score J-REGION identity % J-REGION identity nt D-GENE D-REGION reading frame CDR1-IMGT length CDR2-IMGT length CDR3-IMGT length CDR-IMGT lengths FR-IMGT lengths AA JUNCTION JUNCTION frame Orientation Functionality comment V-REGION potential ins/del J-GENE and allele comment V-REGION insertions V-REGION deletions Sequence 1 lcl|FLN1FA001B9SVM.1| productive IGHV1-69 or IGHV1-69D 790 100 159/159 nt IGHJ4 186 87.5 42/48 nt IGHD2-15 2 X 8 16 X.8.16 [X.7.38.11] CYLGYCSGGSCYPQVGYW in-frame + gggcttgagtggatgggagggatcatccctatctttggtacagcaaactacgcacagaagttccagggcagagtcacgattaccgcggacgaatccacgagcacagcctacatggagctgagcagcctgagatctgaggacacggccgtgtattactgttatttaggatattgtagtggtggtagctgctaccctcaggttggctactggggccagggaaccctggtcaccgtctcctcag 2 lcl|FLN1FA001CUVDF.1| productive IGHV3-30 or IGHV3-30-3 786 99.38 159/160 nt IGHJ4 231 97.92 47/48 nt IGHD2-15 2 X 8 13 X.8.13 [X.7.38.11] CVTYCSGGSCYFDYW in-frame + ggggctggagtgggtggcagttatatcatatgatggaagtaataaatactacgtagactccgtgaagggccgattcaccatctccagagacaattccaagaacacgctgtatctgcaaatgaacagcctgagagctgaggacacggctgtgtattactgtgttacatattgtagtggtggtagctgctactttgactactggggccagggaaccctggtcaccgtctcctcag 3 lcl|FLN1FA001DLPHD.1| productive IGHV1-3 775 100 156/156 nt IGHJ4 186 87.5 42/48 nt IGHD3-16 2 X 8 9 X.8.9 [X.6.38.11] CYISGSYVGYW in-frame + cttgagtggatgggatggatcaacgctggcaatggtaacacaaaatattcacagaagttccagggcagagtcaccattaccagggacacatccgcgagcacagcctacatggagctgagcagcctgagatctgaagacacggctgtgtattactgttacatttcggggagttatgtaggctactggggccagggaaccctggtcaccgtctcctcag 4 lcl|FLN1FA002QTWMQ.1| productive IGHV4-39 775 100 156/156 nt IGHJ4 195 89.58 43/48 nt IGHD3-10 3 X 7 11 X.7.11 [X.7.38.11] CYSAVVRGRFDYW in-frame + gggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgttatagcgcggtggtacggggaagatttgactactggggccagggaaccctggtcaccgtctcctcag 5 lcl|FLN1FA002Q975Z.1| productive IGHV3-53 771 99.36 156/157 nt IGHJ4 168 83.33 40/48 nt IGHD2-21 3 X 7 10 X.7.10 [X.7.38.11] CVVVTATPHGYW in-frame + ggggctggagtgggtctcagttatttatagcggtggtagcacatactacgcagactccgtgaagggccgattcaccatctccagagacaattccaaggacacgctgtatcttcaaatgaacagcctgagagccgaggacacggccgtgtattactgtgtggtggtgactgctactccccatgggtactggggccagggaaccctggtcaccgtctcctcag 6 lcl|FLN1FA001AX4MF.1| productive IGHV4-39 770 100 155/155 nt IGHJ4 222 95.83 46/48 nt IGHD3-22 2 X 7 15 X.7.15 [X.6.38.11] CVVNYYDSSGYYYIDYW in-frame + ggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgtgtggtaaattactatgatagtagtggttattactacatagactactggggccagggaaccctggtcaccgtctcctcag 7 lcl|FLN1FA0074PUDE.1| productive IGHV4-39 770 100 155/155 nt IGHJ4 222 95.83 46/48 nt IGHD3-22 2 X 7 15 X.7.15 [X.6.38.11] CVVNYYDSSGYYYIDYW in-frame + ggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgtgtggtaaattactatgatagtagtggttattactacatagactactggggccagggaaccctggtcaccgtctcctcag 8 lcl|FLN1FA0013V4SA.1| productive IGHV1-3 790 100 159/159 nt IGHJ4 186 87.5 42/48 nt IGHD2-15 2 X 8 16 X.8.16 [X.7.38.11] CYLGYCSGGSCYPQVGYW in-frame + aggcttgagtggatgggatggatcaacgctggcaatggtaacacaaaatattcacagaagttccagggcagagtcaccattaccagggacacatccgcgagcacagcctacatggagctgagcagcctgagatctgaagacacggctgtgtattactgttatttaggatattgtagtggtggtagctgctaccctcaggttggctactggggccagggaaccctggtcaccgtctcctcag 9 lcl|FLN1FA00056KW6.1| productive IGHV1-3 775 100 156/156 nt IGHJ4 186 87.5 42/48 nt IGHD3-16 2 X 8 9 X.8.9 [X.6.38.11] CYISGSYVGYW in-frame + cttgagtggatgggatggatcaacgctggcaatggtaacacaaaatattcacagaagttccagggcagagtcaccattaccagggacacatccgcgagcacagcctacatggagctgagcagcctgagatctgaagacacggctgtgtattactgttacatttcggggagttatgtaggctactggggccagggaaccctggtcaccgtctcctcag 10 lcl|FLN1FA006WKNJR.1| productive IGHV3-53 771 99.36 156/157 nt IGHJ4 168 83.33 40/48 nt IGHD2-21 3 X 7 10 X.7.10 [X.7.38.11] CVVVTATPHGYW in-frame + ggggctggagtgggtctcagttatttatagcggtggtagcacatactacgcagactccgtgaagggccgattcaccatctccagagacaattccaaggacacgctgtatcttcaaatgaacagcctgagagccgaggacacggccgtgtattactgtgtggtggtgactgctactccccatgggtactggggccagggaaccctggtcaccgtctcctcag 11 lcl|FLN1FA008ANOPH.1| productive IGHV4-39 775 100 156/156 nt IGHJ4 195 89.58 43/48 nt IGHD3-10 3 X 7 11 X.7.11 [X.7.38.11] CYSAVVRGRFDYW in-frame + gggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgttatagcgcggtggtacggggaagatttgactactggggccagggaaccctggtcaccgtctcctcag 12 lcl|FLN1FA005T7JJ8.1| productive IGHV3-33 795 100 160/160 nt IGHJ4 222 95.83 46/48 nt IGHD3-22 2 X 8 15 X.8.15 [X.7.38.11] CVTYYYDSSGYPYFDYW in-frame + ggggctggagtgggtggcagttatatggtatgatggaagtaataaatactatgcagactccgtgaagggccgattcaccatctccagagacaattccaagaacacgctgtatctgcaaatgaacagcctgagagccgaggacacggctgtgtattactgtgtaacgtattactatgatagtagtggttatccttactttgactactggggccagggaaccctggtcaccgtctcctcag 13 lcl|FLN1FA0018WER7.1| productive IGHV4-39 770 100 155/155 nt IGHJ4 222 95.83 46/48 nt IGHD3-22 2 X 7 15 X.7.15 [X.6.38.11] CVVNYYDSSGYYYIDYW in-frame + ggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgtgtggtaaattactatgatagtagtggttattactacatagactactggggccagggaaccctggtcaccgtctcctcag 14 lcl|FLN1FA004BRKX9.1| productive IGHV1-3 775 100 156/156 nt IGHJ4 186 87.5 42/48 nt IGHD3-16 2 X 8 9 X.8.9 [X.6.38.11] CYISGSYVGYW in-frame + cttgagtggatgggatggatcaacgctggcaatggtaacacaaaatattcacagaagttccagggcagagtcaccattaccagggacacatccgcgagcacagcctacatggagctgagcagcctgagatctgaagacacggctgtgtattactgttacatttcggggagttatgtaggctactggggccagggaaccctggtcaccgtctcctcag 15 lcl|FLN1FA00826HO1.1| productive IGHV4-39 775 100 156/156 nt IGHJ4 195 89.58 43/48 nt IGHD3-10 3 X 7 11 X.7.11 [X.7.38.11] CYSAVVRGRFDYW in-frame + gggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgttatagcgcggtggtacggggaagatttgactactggggccagggaaccctggtcaccgtctcctcag 16 lcl|FLN1FA0041SQ1V.1| productive IGHV3-53 771 99.36 156/157 nt IGHJ4 168 83.33 40/48 nt IGHD2-21 3 X 7 10 X.7.10 [X.7.38.11] CVVVTATPHGYW in-frame + ggggctggagtgggtctcagttatttatagcggtggtagcacatactacgcagactccgtgaagggccgattcaccatctccagagacaattccaaggacacgctgtatcttcaaatgaacagcctgagagccgaggacacggccgtgtattactgtgtggtggtgactgctactccccatgggtactggggccagggaaccctggtcaccgtctcctcag 17 lcl|FLN1FA000BBO91.1| productive IGHV3-33 795 100 160/160 nt IGHJ4 222 95.83 46/48 nt IGHD3-22 2 X 8 15 X.8.15 [X.7.38.11] CVTYYYDSSGYPYFDYW in-frame + ggggctggagtgggtggcagttatatggtatgatggaagtaataaatactatgcagactccgtgaagggccgattcaccatctccagagacaattccaagaacacgctgtatctgcaaatgaacagcctgagagccgaggacacggctgtgtattactgtgtaacgtattactatgatagtagtggttatccttactttgactactggggccagggaaccctggtcaccgtctcctcag 18 lcl|FLN1FA008W37HH.1| productive IGHV4-39 775 100 156/156 nt IGHJ4 195 89.58 43/48 nt IGHD3-10 3 X 7 11 X.7.11 [X.7.38.11] CYSAVVRGRFDYW in-frame + gggctggagtggattgggagtatctattatagtgggagcacctactacaacccgtccctcaagagtcgagtcaccatatccgtagacacgtccaagaaccagttctccctgaagctgagctctgtgaccgccgcagacacggctgtgtattactgttatagcgcggtggtacggggaagatttgactactggggccagggaaccctggtcaccgtctcctcag 19 lcl|FLN1FA0080EWJB.1| productive IGHV1-3 775 100 156/156 nt IGHJ4 186 87.5 42/48 nt IGHD3-16 2 X 8 9 X.8.9 [X.6.38.11] CYISGSYVGYW in-frame + cttgagtggatgggatggatcaacgctggcaatggtaacacaaaatattcacagaagttccagggcagagtcaccattaccagggacacatccgcgagcacagcctacatggagctgagcagcctgagatctgaagacacggctgtgtattactgttacatttcggggagttatgtaggctactggggccagggaaccctggtcaccgtctcctcag 20 lcl|FLN1FA003C09AP.1| productive IGHV1-3 790 100 159/159 nt IGHJ4 186 87.5 42/48 nt IGHD2-15 2 X 8 16 X.8.16 [X.7.38.11] CYLGYCSGGSCYPQVGYW in-frame + aggcttgagtggatgggatggatcaacgctggcaatggtaacacaaaatattcacagaagttccagggcagagtcaccattaccagggacacatccgcgagcacagcctacatggagctgagcagcctgagatctgaagacacggctgtgtattactgttatttaggatattgtagtggtggtagctgctaccctcaggttggctactggggccagggaaccctggtcaccgtctcctcag