Mercurial > repos > chmaramis > irprofiler

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<h3>Test Data Name Conventions</h3>
<p>Concerning the naming of the execution parameters, input and output files, the following convention applies: </p>
<ul>
<li class="container">The name starts with the tool specifier; see Tool Specifiers Table below.</li>
<li class="container">The clonotype definition specifier follows, if needed; see Clonotype Definition Specifiers Table below.</li>
<li class="container">The gene specifier (geneV or geneJ) follows, if needed.</li>
<li class="container">The cell type specifier (BCR or TCR) follows.</li>
<li class="container">The name ends with the file content specifier (input, output or parameters).</li>
</ul>

<p><i>Tool Specifiers Table</i></p>
<table style="border-spacing: 10px 0px">
<tr align="left">
<th>Index</th>
<th>Tool</th>
<th>Specifier</th>
</tr>
<tr>
<td>1</td>
<td>Data Filtering</td>
<td>data_filter</td>
</tr>
<tr>
<td>2</td>
<td>Clonotype Diversity &amp; Expression</td>
<td>clono_compute</td>
</tr>
<tr>
<td>3</td>
<td>Gene Usage</td>
<td>gene_usage</td>
</tr>
<tr>
<td>4</td>
<td>Public Clonotypes</td>
<td>public_clonos</td>
</tr>
<tr>
<td>5</td>
<td>Exclusive Clonotypes</td>
<td>exclusive_clonos</td>
</tr>
<tr>
<td>6</td>
<td>Gene Usage Comparison</td>
<td>gene_compare</td>
</tr>
</table>

<br>

<p><i>Clonotype Definition Specifiers Table</i></p>
<table style="border-spacing: 10px 0px">
<tr align="left">
<th>Index</th>
<th>Clonotype Definition</th>
<th>Specifier</th>
</tr>
<tr>
<td>1</td>
<td>CDR3</td>
<td>def1</td>
</tr>
<tr>
<td>2</td>
<td>V+CDR3</td>
<td>def2</td>
</tr>
<tr>
<td>3</td>
<td>J+CDR3</td>
<td>def3</td>
</tr>
<tr>
<td>4</td>
<td>V+J+CDR3</td>
<td>def4</td>
</tr>
<tr>
<td>5</td>
<td>V+D+J+CDR3</td>
<td>def5</td>
</tr>
</table>
author	chmaramis
date	Mon, 30 Apr 2018 04:47:52 -0400
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