annotate cmpb2016/appending.py @ 0:8be019b173e6 draft

Uploaded included tools

# -*- coding: utf-8 -*-
"""
Created on Wed Nov 05 14:17:24 2014

@author: chmaramis
"""

import numpy as np
from pandas import *
from numpy import nan as NA
import sys
import time

def appending(arg):

    appfr = DataFrame()
    for path in arg:
        frame = DataFrame()
        tp = read_csv(path, iterator=True, chunksize=1000,sep='\t', index_col=0 )
        frame = concat([chunk for chunk in tp])
        appfr = appfr.append(frame)
    appfr = appfr[frame.columns]
    appfr.index = range(1,len(appfr)+1)
    return appfr

if __name__ == '__main__':   

    start=time.time()

    # Parse input arguments    
    arg=sys.argv[2:]
    lastEl = sys.argv[1]
            
    # Execute basic function
    appfr = appending(arg)
    
    # Save output to CSV files
    if not appfr.empty:        
        appfr.to_csv(lastEl, sep= '\t')
        
    # Print execution time
    stop=time.time()
    print('Runtime:' + str(stop-start))