Mercurial > repos > chrisb > gap_all_glycan_tools

diff manipulate/minimal_kcf/README_minimal.md @ 0:89592faa2875 draft

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author chrisb
date Wed, 23 Mar 2016 14:35:56 -0400
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+++ b/manipulate/minimal_kcf/README_minimal.md	Wed Mar 23 14:35:56 2016 -0400
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+[TOC]
+
+# rename_kcf.py
+This tool reads kcf glycans and removes all additional data which may cause tools to malfunction. For instance REFERENCE, DBLINKS, MASS etc. Only ENTRY, NODE and EDGE entries are kept
+
+## Works with Galaxy?
+Yes. see [minimal_kcf.xml](minimal_kcf.xml)
+
+## Command line usage
+
+```
+../../virtualpy/bin/activate
+python minimal_kcf.py -i $input -o $kcfoutput
+```
+
+
+## Help
+```
+../../virtualpy/bin/activate
+python minimal_kcf.py -h
+```
+
+## Unit Testing?
+Yes.
+
+
+```
+../../virtualpy/bin/activate
+python  test_minimal_kcf.py
+```