Mercurial > repos > chrisd > amrplusplus_workflow
annotate amrplusplus_workflow.ga @ 7:0b7210ad9187 draft
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
author | chrisd |
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date | Sat, 25 Jun 2016 17:17:42 -0400 |
parents | 86dc721b6860 |
children | 0eae27b15aa0 |
rev | line source |
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5
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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1 { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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2 "a_galaxy_workflow": "true", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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3 "annotation": "", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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4 "format-version": "0.1", |
6
86dc721b6860
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
5
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5 "name": "amrplusplus workflow", |
5
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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6 "steps": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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7 "0": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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8 "annotation": "", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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9 "content_id": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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10 "id": 0, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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11 "input_connections": {}, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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12 "inputs": [ |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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13 { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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14 "description": "", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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15 "name": "FASTQ Forward" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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16 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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17 ], |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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18 "label": "FASTQ Forward", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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19 "name": "Input dataset", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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20 "outputs": [], |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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21 "position": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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22 "left": 252, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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23 "top": 323 |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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24 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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25 "tool_errors": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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26 "tool_id": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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27 "tool_state": "{\"name\": \"FASTQ Forward\"}", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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28 "tool_version": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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29 "type": "data_input", |
7
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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30 "uuid": "f1e841db-6f7a-4f32-bd87-8d0d934c4cc1", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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31 "workflow_outputs": [ |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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32 { |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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33 "label": null, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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34 "output_name": "output", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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35 "uuid": "ad47f164-7e7a-4d22-a967-551b2378427a" |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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36 } |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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37 ] |
5
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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38 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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39 "1": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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parents:
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40 "annotation": "", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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41 "content_id": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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42 "id": 1, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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parents:
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43 "input_connections": {}, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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44 "inputs": [ |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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45 { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
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46 "description": "", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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47 "name": "FASTQ Reverse" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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48 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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49 ], |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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50 "label": "FASTQ Reverse", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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51 "name": "Input dataset", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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52 "outputs": [], |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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53 "position": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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54 "left": 251, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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55 "top": 399 |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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56 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
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57 "tool_errors": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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58 "tool_id": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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59 "tool_state": "{\"name\": \"FASTQ Reverse\"}", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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60 "tool_version": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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61 "type": "data_input", |
7
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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62 "uuid": "a24ee7c0-b919-4426-8866-7d9939536e12", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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63 "workflow_outputs": [ |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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64 { |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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65 "label": null, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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66 "output_name": "output", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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67 "uuid": "edba093d-cdda-4530-916e-a566d94e2040" |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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68 } |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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69 ] |
5
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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70 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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71 "2": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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72 "annotation": "", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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73 "content_id": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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74 "id": 2, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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75 "input_connections": {}, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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76 "inputs": [ |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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77 { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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78 "description": "", |
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79 "name": "Host Genome" |
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80 } |
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81 ], |
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82 "label": "Host Genome", |
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83 "name": "Input dataset", |
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84 "outputs": [], |
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85 "position": { |
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86 "left": 498, |
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87 "top": 200 |
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88 }, |
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89 "tool_errors": null, |
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90 "tool_id": null, |
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91 "tool_state": "{\"name\": \"Host Genome\"}", |
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92 "tool_version": null, |
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93 "type": "data_input", |
7
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94 "uuid": "96c8f450-cb64-4641-884a-c1dabceeff5d", |
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95 "workflow_outputs": [ |
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96 { |
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97 "label": null, |
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98 "output_name": "output", |
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99 "uuid": "2fb141c8-5d0b-4044-906d-adaa7a07f66e" |
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100 } |
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101 ] |
5
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102 }, |
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103 "3": { |
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104 "annotation": "", |
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105 "content_id": null, |
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106 "id": 3, |
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107 "input_connections": {}, |
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108 "inputs": [ |
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109 { |
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110 "description": "", |
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111 "name": "AMR Database" |
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112 } |
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113 ], |
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114 "label": "AMR Database", |
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115 "name": "Input dataset", |
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116 "outputs": [], |
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117 "position": { |
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118 "left": 1086, |
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119 "top": 560 |
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120 }, |
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121 "tool_errors": null, |
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122 "tool_id": null, |
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123 "tool_state": "{\"name\": \"AMR Database\"}", |
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124 "tool_version": null, |
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125 "type": "data_input", |
7
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126 "uuid": "2615ede9-3d0a-422b-b04d-829157475d47", |
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127 "workflow_outputs": [ |
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128 { |
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129 "label": null, |
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130 "output_name": "output", |
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131 "uuid": "32fcc9ba-8864-4fa7-a337-917a9612844a" |
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132 } |
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133 ] |
5
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134 }, |
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135 "4": { |
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136 "annotation": "", |
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137 "content_id": "toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.32.3", |
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138 "id": 4, |
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139 "input_connections": { |
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140 "paired_end|paired_input_type_conditional|fastq_r1_in": { |
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141 "id": 0, |
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142 "output_name": "output" |
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143 }, |
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144 "paired_end|paired_input_type_conditional|fastq_r2_in": { |
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145 "id": 1, |
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146 "output_name": "output" |
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147 } |
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148 }, |
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149 "inputs": [], |
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150 "label": null, |
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151 "name": "Trimmomatic", |
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152 "outputs": [ |
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153 { |
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154 "name": "fastq_out_paired", |
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155 "type": "input" |
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156 }, |
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157 { |
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158 "name": "fastq_out_unpaired", |
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159 "type": "input" |
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160 }, |
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161 { |
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162 "name": "fastq_out_r1_paired", |
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163 "type": "fastqsanger" |
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164 }, |
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165 { |
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166 "name": "fastq_out_r2_paired", |
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167 "type": "fastqsanger" |
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168 }, |
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169 { |
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170 "name": "fastq_out_r1_unpaired", |
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171 "type": "fastqsanger" |
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172 }, |
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173 { |
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174 "name": "fastq_out_r2_unpaired", |
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175 "type": "fastqsanger" |
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176 }, |
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177 { |
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178 "name": "fastq_out", |
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179 "type": "fastqsanger" |
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180 } |
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181 ], |
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182 "position": { |
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183 "left": 465, |
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184 "top": 303 |
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185 }, |
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186 "post_job_actions": { |
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187 "HideDatasetActionfastq_out": { |
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188 "action_arguments": {}, |
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189 "action_type": "HideDatasetAction", |
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190 "output_name": "fastq_out" |
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191 }, |
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192 "HideDatasetActionfastq_out_paired": { |
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193 "action_arguments": {}, |
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194 "action_type": "HideDatasetAction", |
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195 "output_name": "fastq_out_paired" |
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196 }, |
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197 "HideDatasetActionfastq_out_r1_unpaired": { |
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198 "action_arguments": {}, |
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199 "action_type": "HideDatasetAction", |
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200 "output_name": "fastq_out_r1_unpaired" |
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201 }, |
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202 "HideDatasetActionfastq_out_r2_unpaired": { |
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203 "action_arguments": {}, |
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204 "action_type": "HideDatasetAction", |
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205 "output_name": "fastq_out_r2_unpaired" |
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206 }, |
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207 "HideDatasetActionfastq_out_unpaired": { |
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208 "action_arguments": {}, |
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209 "action_type": "HideDatasetAction", |
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210 "output_name": "fastq_out_unpaired" |
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211 } |
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212 }, |
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213 "tool_errors": null, |
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214 "tool_id": "toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.32.3", |
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215 "tool_shed_repository": { |
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216 "changeset_revision": "f8a9a5eaca8a", |
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217 "name": "trimmomatic", |
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218 "owner": "pjbriggs", |
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219 "tool_shed": "toolshed.g2.bx.psu.edu" |
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220 }, |
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221 "tool_state": "{\"operations\": \"[{\\\"__index__\\\": 0, \\\"operation\\\": {\\\"window_size\\\": \\\"4\\\", \\\"name\\\": \\\"SLIDINGWINDOW\\\", \\\"__current_case__\\\": 0, \\\"required_quality\\\": \\\"20\\\"}}]\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"paired_end\": \"{\\\"is_paired_end\\\": \\\"true\\\", \\\"paired_input_type_conditional\\\": {\\\"paired_input_type\\\": \\\"pair_of_files\\\", \\\"fastq_r1_in\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0, \\\"fastq_r2_in\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, \\\"__current_case__\\\": 1}\", \"illuminaclip\": \"{\\\"do_illuminaclip\\\": \\\"false\\\", \\\"__current_case__\\\": 1}\"}", |
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222 "tool_version": "0.32.3", |
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223 "type": "tool", |
7
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224 "uuid": "c943ae63-aa6c-4d42-9088-b08335b8b6c6", |
5
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225 "workflow_outputs": [ |
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226 { |
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227 "label": null, |
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228 "output_name": "fastq_out_r1_paired", |
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229 "uuid": "e5cb04a2-09b6-41e5-b93d-54c4c6c8e488" |
5
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230 }, |
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231 { |
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232 "label": null, |
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233 "output_name": "fastq_out_r2_paired", |
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234 "uuid": "ada191c5-9f20-4052-aa5e-03f73f9587ad" |
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235 } |
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236 ] |
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237 }, |
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238 "5": { |
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239 "annotation": "", |
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240 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1", |
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241 "id": 5, |
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242 "input_connections": { |
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243 "input_type|fastq_input1": { |
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244 "id": 4, |
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245 "output_name": "fastq_out_r1_paired" |
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246 }, |
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247 "input_type|fastq_input2": { |
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248 "id": 4, |
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249 "output_name": "fastq_out_r2_paired" |
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250 }, |
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251 "reference_source|ref_file": { |
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252 "id": 2, |
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253 "output_name": "output" |
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254 } |
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255 }, |
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256 "inputs": [ |
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257 { |
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258 "description": "runtime parameter for tool Map with BWA", |
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259 "name": "input_type" |
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260 }, |
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261 { |
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262 "description": "runtime parameter for tool Map with BWA", |
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263 "name": "input_type" |
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264 }, |
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265 { |
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266 "description": "runtime parameter for tool Map with BWA", |
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267 "name": "reference_source" |
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268 } |
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269 ], |
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270 "label": null, |
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271 "name": "Map with BWA", |
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272 "outputs": [ |
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273 { |
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274 "name": "bam_output", |
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275 "type": "bam" |
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276 } |
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277 ], |
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278 "position": { |
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279 "left": 772.5, |
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280 "top": 306 |
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281 }, |
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282 "post_job_actions": {}, |
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283 "tool_errors": null, |
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284 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1", |
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285 "tool_shed_repository": { |
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286 "changeset_revision": "546ada4a9f43", |
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287 "name": "bwa", |
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288 "owner": "devteam", |
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289 "tool_shed": "toolshed.g2.bx.psu.edu" |
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290 }, |
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291 "tool_state": "{\"__page__\": 0, \"input_type\": \"{\\\"adv_pe_options\\\": {\\\"__current_case__\\\": 1, \\\"adv_pe_options_selector\\\": \\\"do_not_set\\\"}, \\\"fastq_input2\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0, \\\"input_type_selector\\\": \\\"paired\\\", \\\"fastq_input1\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"__rerun_remap_job_id__\": null, \"rg\": \"{\\\"rg_selector\\\": \\\"do_not_set\\\", \\\"__current_case__\\\": 3}\", \"analysis_type\": \"{\\\"analysis_type_selector\\\": \\\"illumina\\\", \\\"__current_case__\\\": 0}\", \"reference_source\": \"{\\\"ref_file\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"reference_source_selector\\\": \\\"history\\\", \\\"__current_case__\\\": 1, \\\"index_a\\\": \\\"auto\\\"}\"}", |
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292 "tool_version": "0.7.12.1", |
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293 "type": "tool", |
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294 "uuid": "3c509fb7-aef9-4e6d-bbb7-f6099d71f15e", |
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295 "workflow_outputs": [ |
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296 { |
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297 "label": null, |
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298 "output_name": "bam_output", |
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299 "uuid": "d7011177-89c7-48ac-928e-935c6eecf92d" |
5
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300 } |
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301 ] |
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302 }, |
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303 "6": { |
5
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304 "annotation": "", |
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305 "content_id": "toolshed.g2.bx.psu.edu/repos/brenninc/samtools_flag_filter_1_2/samtools_flag_filter/0.1", |
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306 "id": 6, |
5
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307 "input_connections": { |
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308 "input": { |
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309 "id": 5, |
5
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310 "output_name": "bam_output" |
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311 } |
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312 }, |
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313 "inputs": [ |
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314 { |
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315 "description": "runtime parameter for tool Samtools flag_filter", |
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316 "name": "input" |
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317 } |
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318 ], |
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319 "label": null, |
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320 "name": "Samtools flag_filter", |
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321 "outputs": [ |
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322 { |
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323 "name": "output", |
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324 "type": "bam" |
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325 } |
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326 ], |
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327 "position": { |
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328 "left": 1004.5, |
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329 "top": 303 |
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330 }, |
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331 "post_job_actions": {}, |
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332 "tool_errors": null, |
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333 "tool_id": "toolshed.g2.bx.psu.edu/repos/brenninc/samtools_flag_filter_1_2/samtools_flag_filter/0.1", |
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334 "tool_shed_repository": { |
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335 "changeset_revision": "97bb72be07f9", |
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336 "name": "samtools_flag_filter_1_2", |
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337 "owner": "brenninc", |
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338 "tool_shed": "toolshed.g2.bx.psu.edu" |
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339 }, |
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340 "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"bits\": \"[{\\\"__index__\\\": 0, \\\"flag\\\": \\\"0x0004\\\", \\\"state\\\": \\\"f\\\"}]\", \"__page__\": 0}", |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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341 "tool_version": "0.1", |
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342 "type": "tool", |
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343 "uuid": "e31b4dcc-9623-4c50-8139-214e40fe29d0", |
5
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344 "workflow_outputs": [ |
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345 { |
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346 "label": null, |
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347 "output_name": "output", |
7
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348 "uuid": "c9c36760-d2a9-4c05-808c-05a092260670" |
5
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349 } |
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350 ] |
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351 }, |
7
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352 "7": { |
5
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353 "annotation": "", |
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354 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1", |
7
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355 "id": 7, |
5
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356 "input_connections": { |
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357 "input_type|bam_input": { |
7
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358 "id": 6, |
5
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359 "output_name": "output" |
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360 }, |
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361 "reference_source|ref_file": { |
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362 "id": 3, |
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363 "output_name": "output" |
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364 } |
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365 }, |
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366 "inputs": [ |
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367 { |
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368 "description": "runtime parameter for tool Map with BWA", |
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369 "name": "input_type" |
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370 }, |
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371 { |
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372 "description": "runtime parameter for tool Map with BWA", |
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373 "name": "reference_source" |
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374 } |
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375 ], |
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376 "label": null, |
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377 "name": "Map with BWA", |
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378 "outputs": [ |
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379 { |
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380 "name": "bam_output", |
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381 "type": "bam" |
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382 } |
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383 ], |
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384 "position": { |
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385 "left": 1279.5, |
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386 "top": 305 |
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387 }, |
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388 "post_job_actions": {}, |
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389 "tool_errors": null, |
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390 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1", |
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391 "tool_shed_repository": { |
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392 "changeset_revision": "546ada4a9f43", |
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393 "name": "bwa", |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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394 "owner": "devteam", |
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395 "tool_shed": "toolshed.g2.bx.psu.edu" |
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396 }, |
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397 "tool_state": "{\"__page__\": 0, \"input_type\": \"{\\\"bam_input\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 3, \\\"input_type_selector\\\": \\\"paired_bam\\\", \\\"adv_bam_pe_options\\\": {\\\"__current_case__\\\": 1, \\\"adv_pe_options_selector\\\": \\\"do_not_set\\\"}}\", \"__rerun_remap_job_id__\": null, \"rg\": \"{\\\"rg_selector\\\": \\\"do_not_set\\\", \\\"__current_case__\\\": 3}\", \"analysis_type\": \"{\\\"analysis_type_selector\\\": \\\"illumina\\\", \\\"__current_case__\\\": 0}\", \"reference_source\": \"{\\\"ref_file\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"reference_source_selector\\\": \\\"history\\\", \\\"__current_case__\\\": 1, \\\"index_a\\\": \\\"auto\\\"}\"}", |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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398 "tool_version": "0.7.12.1", |
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399 "type": "tool", |
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400 "uuid": "4dff04dd-4331-4390-a21d-64140a177ce4", |
5
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401 "workflow_outputs": [ |
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402 { |
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403 "label": null, |
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404 "output_name": "bam_output", |
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405 "uuid": "341955c7-7ae9-4872-a52a-f6b2f298cba1" |
5
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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406 } |
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407 ] |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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408 }, |
7
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409 "8": { |
5
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410 "annotation": "", |
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411 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0", |
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412 "id": 8, |
5
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413 "input_connections": { |
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414 "input1": { |
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415 "id": 7, |
5
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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416 "output_name": "bam_output" |
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417 } |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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418 }, |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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419 "inputs": [ |
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420 { |
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421 "description": "runtime parameter for tool Sort", |
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422 "name": "input1" |
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423 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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424 ], |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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425 "label": null, |
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426 "name": "Sort", |
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427 "outputs": [ |
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428 { |
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429 "name": "output1", |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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430 "type": "bam" |
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431 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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432 ], |
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433 "position": { |
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434 "left": 1506, |
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435 "top": 306 |
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436 }, |
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437 "post_job_actions": {}, |
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438 "tool_errors": null, |
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439 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0", |
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440 "tool_shed_repository": { |
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441 "changeset_revision": "a430da4f04cd", |
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442 "name": "samtools_sort", |
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443 "owner": "devteam", |
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444 "tool_shed": "toolshed.g2.bx.psu.edu" |
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445 }, |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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446 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"sort_mode\": \"\\\"-n\\\"\"}", |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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447 "tool_version": "2.0", |
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448 "type": "tool", |
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449 "uuid": "97ca7254-d03b-4cf3-810c-7dbaa6f65e72", |
5
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450 "workflow_outputs": [ |
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451 { |
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452 "label": null, |
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453 "output_name": "output1", |
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454 "uuid": "7b4416a5-ff90-4d1a-83c3-24c44e77f640" |
5
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455 } |
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456 ] |
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457 }, |
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458 "9": { |
5
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459 "annotation": "", |
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460 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0", |
7
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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diff
changeset
|
461 "id": 9, |
5
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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diff
changeset
|
462 "input_connections": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
463 "input1": { |
7
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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diff
changeset
|
464 "id": 8, |
5
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
465 "output_name": "output1" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
466 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff
changeset
|
467 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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diff
changeset
|
468 "inputs": [ |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff
changeset
|
469 { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff
changeset
|
470 "description": "runtime parameter for tool BAM-to-SAM", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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diff
changeset
|
471 "name": "input1" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
472 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
473 ], |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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diff
changeset
|
474 "label": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
475 "name": "BAM-to-SAM", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
476 "outputs": [ |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
477 { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
478 "name": "output1", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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479 "type": "sam" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
480 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
481 ], |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
482 "position": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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diff
changeset
|
483 "left": 1507.5, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
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484 "top": 433 |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
485 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
486 "post_job_actions": {}, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
487 "tool_errors": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
488 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
489 "tool_shed_repository": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
490 "changeset_revision": "af7c50162f0b", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
491 "name": "bam_to_sam", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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492 "owner": "devteam", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
493 "tool_shed": "toolshed.g2.bx.psu.edu" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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|
494 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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|
495 "tool_state": "{\"header\": \"\\\"-h\\\"\", \"__rerun_remap_job_id__\": null, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__page__\": 0}", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
496 "tool_version": "2.0", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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497 "type": "tool", |
7
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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diff
changeset
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498 "uuid": "5196c387-3fad-46dc-9e6f-63af7ffae562", |
5
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
499 "workflow_outputs": [ |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
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diff
changeset
|
500 { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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parents:
diff
changeset
|
501 "label": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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changeset
|
502 "output_name": "output1", |
7
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
503 "uuid": "a4536845-4aaa-4a65-bc1b-e235f762a742" |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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diff
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|
504 } |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
505 ] |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
506 }, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
507 "10": { |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
508 "annotation": "", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
509 "content_id": "toolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
510 "id": 10, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
511 "input_connections": { |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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diff
changeset
|
512 "input1": { |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
513 "id": 3, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
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|
514 "output_name": "output" |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
515 }, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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diff
changeset
|
516 "sam_type|sampe_input2": { |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
517 "id": 9, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
518 "output_name": "output1" |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
519 } |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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diff
changeset
|
520 }, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
521 "inputs": [ |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
522 { |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
523 "description": "runtime parameter for tool Snip Finder", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
524 "name": "sam_type" |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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525 }, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
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diff
changeset
|
526 { |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
527 "description": "runtime parameter for tool Snip Finder", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
528 "name": "input1" |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
529 } |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
530 ], |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
531 "label": null, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
532 "name": "Snip Finder", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
533 "outputs": [ |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
534 { |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
535 "name": "output1", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
536 "type": "tabular" |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
537 } |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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diff
changeset
|
538 ], |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
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changeset
|
539 "position": { |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
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diff
changeset
|
540 "left": 1368, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
541 "top": 551 |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
542 }, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
543 "post_job_actions": {}, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
544 "tool_errors": null, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
545 "tool_id": "toolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
546 "tool_shed_repository": { |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
547 "changeset_revision": "d9be5a7e70f5", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
548 "name": "snipfinder", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
549 "owner": "chrisd", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
550 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
551 }, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
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diff
changeset
|
552 "tool_state": "{\"sam_type\": \"{\\\"best\\\": \\\"false\\\", \\\"mode\\\": \\\"paired_end\\\", \\\"__current_case__\\\": 1, \\\"sampe_input2\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
553 "tool_version": "0.1.0", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
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diff
changeset
|
554 "type": "tool", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
555 "uuid": "3c0b1793-8625-4529-a406-6ffa822b38ab", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
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diff
changeset
|
556 "workflow_outputs": [ |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
557 { |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
558 "label": null, |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
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diff
changeset
|
559 "output_name": "output1", |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
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diff
changeset
|
560 "uuid": "b58e3331-4b37-49d9-b311-1120ca9606e6" |
5
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
561 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
562 ] |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
563 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
564 "11": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
565 "annotation": "", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
566 "content_id": "toolshed.g2.bx.psu.edu/repos/chrisd/coverage_sampler/gene_fraction/0.1.0", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
567 "id": 11, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
568 "input_connections": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
569 "input1": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
570 "id": 3, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
571 "output_name": "output" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
572 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
573 "input2": { |
7
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
chrisd
parents:
6
diff
changeset
|
574 "id": 9, |
5
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
575 "output_name": "output1" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
576 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
577 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
578 "inputs": [ |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
579 { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
580 "description": "runtime parameter for tool Coverage Sampler", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
581 "name": "input2" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
582 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
583 { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
584 "description": "runtime parameter for tool Coverage Sampler", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
585 "name": "input1" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
586 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
587 ], |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
588 "label": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
589 "name": "Coverage Sampler", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
590 "outputs": [ |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
591 { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
592 "name": "output1", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
593 "type": "tabular" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
594 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
595 ], |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
596 "position": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
597 "left": 1618.5, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
598 "top": 553 |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
599 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
600 "post_job_actions": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
601 "HideDatasetActionoutput1": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
602 "action_arguments": {}, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
603 "action_type": "HideDatasetAction", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
604 "output_name": "output1" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
605 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
606 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
607 "tool_errors": null, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
608 "tool_id": "toolshed.g2.bx.psu.edu/repos/chrisd/coverage_sampler/gene_fraction/0.1.0", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
609 "tool_shed_repository": { |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
610 "changeset_revision": "72901052a829", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
611 "name": "coverage_sampler", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
612 "owner": "chrisd", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
613 "tool_shed": "toolshed.g2.bx.psu.edu" |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
614 }, |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
chrisd
parents:
diff
changeset
|
615 "tool_state": "{\"input2\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__page__\": 0, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"min\": \"\\\"5\\\"\", \"max\": \"\\\"100\\\"\", \"__rerun_remap_job_id__\": null, \"samples\": \"\\\"1\\\"\", \"skip\": \"\\\"5\\\"\", \"threshold\": \"\\\"80\\\"\"}", |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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616 "tool_version": "0.1.0", |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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617 "type": "tool", |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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618 "uuid": "0907193f-3458-40a1-b0ba-beac3998da62", |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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619 "workflow_outputs": [] |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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620 } |
04f9c20fecf8
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit c9b00ed961b62f1825feeeb757c283c949a9bce9-dirty
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621 }, |
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0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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622 "uuid": "5f790d55-b08b-45e8-8471-005678ec4eef" |
0b7210ad9187
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty
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623 } |