Mercurial > repos > chrisd > amrplusplus_workflow
annotate Galaxy-Workflow-AmrPlusPlus_PE.ga @ 0:834c10340bce draft
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
author | chrisd |
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date | Wed, 23 Mar 2016 21:49:48 -0400 |
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834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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1 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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2 "a_galaxy_workflow": "true", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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3 "annotation": "", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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4 "format-version": "0.1", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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5 "name": "AmrPlusPlus_PE", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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6 "steps": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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7 "0": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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8 "annotation": "The genome to align non-host reads to", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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9 "content_id": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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10 "id": 0, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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11 "input_connections": {}, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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12 "inputs": [ |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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13 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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14 "description": "The genome to align non-host reads to", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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15 "name": "AMR Database" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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16 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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17 ], |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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18 "label": "AMR Database", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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19 "name": "Input dataset", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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20 "outputs": [], |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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21 "position": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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22 "left": 391, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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23 "top": 200 |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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24 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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25 "tool_errors": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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26 "tool_id": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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27 "tool_state": "{\"name\": \"AMR Database\"}", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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28 "tool_version": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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29 "type": "data_input", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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30 "uuid": "66a5eb48-4b35-46cc-9b93-fd88d97d2218", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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31 "workflow_outputs": [ |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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32 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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33 "label": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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34 "output_name": "output", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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35 "uuid": "d30b93c8-aa9f-49eb-801f-5a02e68a876b" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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36 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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37 ] |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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38 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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39 "1": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
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40 "annotation": "Genome used to filter reads on", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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41 "content_id": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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42 "id": 1, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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43 "input_connections": {}, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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44 "inputs": [ |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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45 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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46 "description": "Genome used to filter reads on", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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47 "name": "Host Genome" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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48 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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49 ], |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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50 "label": "Host Genome", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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51 "name": "Input dataset", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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52 "outputs": [], |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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53 "position": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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54 "left": 391, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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55 "top": 285 |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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56 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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57 "tool_errors": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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58 "tool_id": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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59 "tool_state": "{\"name\": \"Host Genome\"}", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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60 "tool_version": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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61 "type": "data_input", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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62 "uuid": "02603c1f-b5f0-4121-9b57-005a98411364", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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63 "workflow_outputs": [ |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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64 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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65 "label": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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66 "output_name": "output", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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67 "uuid": "6b4607b2-f4d8-4b24-ade6-30b2a6377017" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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68 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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69 ] |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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70 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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71 "2": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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72 "annotation": "Forward reads", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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73 "content_id": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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74 "id": 2, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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75 "input_connections": {}, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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76 "inputs": [ |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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77 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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78 "description": "Forward reads", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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79 "name": "FastQ Forward" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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80 } |
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81 ], |
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82 "label": "FastQ Forward", |
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83 "name": "Input dataset", |
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84 "outputs": [], |
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85 "position": { |
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86 "left": 391, |
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87 "top": 370 |
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88 }, |
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89 "tool_errors": null, |
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90 "tool_id": null, |
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91 "tool_state": "{\"name\": \"FastQ Forward\"}", |
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92 "tool_version": null, |
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93 "type": "data_input", |
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94 "uuid": "f25b69be-a40e-4d89-8535-84e2c3784148", |
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95 "workflow_outputs": [ |
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96 { |
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97 "label": null, |
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98 "output_name": "output", |
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99 "uuid": "cd11b688-012e-4d6e-bac7-a35c97057e8e" |
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100 } |
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101 ] |
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102 }, |
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103 "3": { |
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104 "annotation": "Reverse reads", |
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105 "content_id": null, |
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106 "id": 3, |
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107 "input_connections": {}, |
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108 "inputs": [ |
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109 { |
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110 "description": "Reverse reads", |
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111 "name": "FastQ Reverse" |
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112 } |
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113 ], |
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114 "label": "FastQ Reverse", |
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115 "name": "Input dataset", |
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116 "outputs": [], |
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117 "position": { |
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118 "left": 391, |
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119 "top": 455 |
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120 }, |
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121 "tool_errors": null, |
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122 "tool_id": null, |
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123 "tool_state": "{\"name\": \"FastQ Reverse\"}", |
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124 "tool_version": null, |
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125 "type": "data_input", |
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126 "uuid": "837dabbc-eec6-4490-8944-ab408d02631e", |
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127 "workflow_outputs": [ |
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128 { |
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129 "label": null, |
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130 "output_name": "output", |
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131 "uuid": "3a4ab0ae-6842-42ce-b41c-0bc02f2f1ea5" |
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132 } |
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133 ] |
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134 }, |
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135 "4": { |
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136 "annotation": "", |
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137 "content_id": "testtoolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.32.3", |
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138 "id": 4, |
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139 "input_connections": { |
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140 "paired_end|paired_input_type_conditional|fastq_r1_in": { |
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141 "id": 2, |
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142 "output_name": "output" |
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143 }, |
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144 "paired_end|paired_input_type_conditional|fastq_r2_in": { |
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145 "id": 3, |
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146 "output_name": "output" |
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147 } |
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148 }, |
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149 "inputs": [], |
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150 "label": null, |
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151 "name": "Trimmomatic", |
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152 "outputs": [ |
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153 { |
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154 "name": "fastq_out_paired", |
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155 "type": "input" |
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156 }, |
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157 { |
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158 "name": "fastq_out_unpaired", |
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159 "type": "input" |
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160 }, |
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161 { |
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162 "name": "fastq_out_r1_paired", |
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163 "type": "fastqsanger" |
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164 }, |
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165 { |
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166 "name": "fastq_out_r2_paired", |
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167 "type": "fastqsanger" |
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168 }, |
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169 { |
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170 "name": "fastq_out_r1_unpaired", |
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171 "type": "fastqsanger" |
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172 }, |
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173 { |
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174 "name": "fastq_out_r2_unpaired", |
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175 "type": "fastqsanger" |
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176 }, |
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177 { |
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178 "name": "fastq_out", |
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179 "type": "fastqsanger" |
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180 } |
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181 ], |
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182 "position": { |
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183 "left": 626, |
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184 "top": 200 |
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185 }, |
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186 "post_job_actions": { |
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187 "DeleteIntermediatesActionfastq_out_paired": { |
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188 "action_arguments": {}, |
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189 "action_type": "DeleteIntermediatesAction", |
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190 "output_name": "fastq_out_paired" |
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191 }, |
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192 "HideDatasetActionfastq_out": { |
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193 "action_arguments": {}, |
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194 "action_type": "HideDatasetAction", |
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195 "output_name": "fastq_out" |
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196 }, |
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197 "HideDatasetActionfastq_out_paired": { |
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198 "action_arguments": {}, |
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199 "action_type": "HideDatasetAction", |
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200 "output_name": "fastq_out_paired" |
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201 }, |
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202 "HideDatasetActionfastq_out_r1_unpaired": { |
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203 "action_arguments": {}, |
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204 "action_type": "HideDatasetAction", |
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205 "output_name": "fastq_out_r1_unpaired" |
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206 }, |
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207 "HideDatasetActionfastq_out_r2_unpaired": { |
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208 "action_arguments": {}, |
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209 "action_type": "HideDatasetAction", |
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210 "output_name": "fastq_out_r2_unpaired" |
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211 }, |
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212 "HideDatasetActionfastq_out_unpaired": { |
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213 "action_arguments": {}, |
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214 "action_type": "HideDatasetAction", |
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215 "output_name": "fastq_out_unpaired" |
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216 } |
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217 }, |
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218 "tool_errors": null, |
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219 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.32.3", |
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220 "tool_state": "{\"operations\": \"[{\\\"__index__\\\": 0, \\\"operation\\\": {\\\"window_size\\\": \\\"4\\\", \\\"name\\\": \\\"SLIDINGWINDOW\\\", \\\"__current_case__\\\": 0, \\\"required_quality\\\": \\\"20\\\"}}]\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"paired_end\": \"{\\\"is_paired_end\\\": \\\"True\\\", \\\"paired_input_type_conditional\\\": {\\\"paired_input_type\\\": \\\"pair_of_files\\\", \\\"fastq_r1_in\\\": null, \\\"__current_case__\\\": 0, \\\"fastq_r2_in\\\": null}, \\\"__current_case__\\\": 1}\", \"illuminaclip\": \"{\\\"do_illuminaclip\\\": \\\"False\\\", \\\"__current_case__\\\": 1}\"}", |
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221 "tool_version": "0.32.3", |
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222 "type": "tool", |
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223 "uuid": "fd478986-09be-4758-9360-a4a345f1efc0", |
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224 "workflow_outputs": [ |
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225 { |
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226 "label": null, |
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227 "output_name": "fastq_out_r1_paired", |
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228 "uuid": "955d6928-ebc0-4dc9-be6c-f2f6f888ca45" |
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229 }, |
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230 { |
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231 "label": null, |
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232 "output_name": "fastq_out_r2_paired", |
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233 "uuid": "19e51c6f-b0b7-46d0-9885-a5701938f310" |
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234 } |
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235 ] |
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236 }, |
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237 "5": { |
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238 "annotation": "", |
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239 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1", |
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240 "id": 5, |
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241 "input_connections": { |
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242 "input_type|fastq_input1": { |
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243 "id": 4, |
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244 "output_name": "fastq_out_r1_paired" |
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245 }, |
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246 "input_type|fastq_input2": { |
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247 "id": 4, |
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248 "output_name": "fastq_out_r2_paired" |
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249 }, |
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250 "reference_source|ref_file": { |
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251 "id": 1, |
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252 "output_name": "output" |
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253 } |
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254 }, |
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255 "inputs": [], |
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256 "label": null, |
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257 "name": "Map with BWA", |
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258 "outputs": [ |
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259 { |
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260 "name": "bam_output", |
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261 "type": "bam" |
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262 } |
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263 ], |
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264 "position": { |
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265 "left": 954, |
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266 "top": 200 |
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267 }, |
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268 "post_job_actions": {}, |
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269 "tool_errors": null, |
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270 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1", |
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271 "tool_state": "{\"__page__\": 0, \"input_type\": \"{\\\"adv_pe_options\\\": {\\\"__current_case__\\\": 1, \\\"adv_pe_options_selector\\\": \\\"do_not_set\\\"}, \\\"fastq_input2\\\": null, \\\"input_type_selector\\\": \\\"paired\\\", \\\"__current_case__\\\": 0, \\\"fastq_input1\\\": null}\", \"__rerun_remap_job_id__\": null, \"rg\": \"{\\\"rg_selector\\\": \\\"do_not_set\\\", \\\"__current_case__\\\": 3}\", \"analysis_type\": \"{\\\"analysis_type_selector\\\": \\\"illumina\\\", \\\"__current_case__\\\": 0}\", \"reference_source\": \"{\\\"ref_file\\\": null, \\\"reference_source_selector\\\": \\\"history\\\", \\\"__current_case__\\\": 1, \\\"index_a\\\": \\\"auto\\\"}\"}", |
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272 "tool_version": "0.7.12.1", |
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273 "type": "tool", |
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274 "uuid": "6d53f77e-8f8a-4b9a-a674-8f7c55824260", |
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275 "workflow_outputs": [ |
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276 { |
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277 "label": null, |
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278 "output_name": "bam_output", |
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279 "uuid": "efa12320-805e-4d96-aa50-2607b1952c6d" |
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280 } |
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281 ] |
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282 }, |
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283 "6": { |
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284 "annotation": "", |
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285 "content_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FilterSamReads/1.136.0", |
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286 "id": 6, |
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287 "input_connections": { |
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288 "inputFile": { |
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289 "id": 5, |
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290 "output_name": "bam_output" |
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291 } |
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292 }, |
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293 "inputs": [], |
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294 "label": null, |
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295 "name": "FilterSamReads", |
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296 "outputs": [ |
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297 { |
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298 "name": "outFile", |
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299 "type": "bam" |
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300 } |
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301 ], |
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302 "position": { |
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303 "left": 1282, |
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304 "top": 200 |
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305 }, |
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306 "post_job_actions": { |
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307 "DeleteIntermediatesActionoutFile": { |
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308 "action_arguments": {}, |
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309 "action_type": "DeleteIntermediatesAction", |
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310 "output_name": "outFile" |
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311 } |
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312 }, |
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313 "tool_errors": null, |
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314 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FilterSamReads/1.136.0", |
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315 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"inputFile\": \"null\", \"filter_type\": \"{\\\"filter\\\": \\\"excludeAligned\\\", \\\"__current_case__\\\": 1}\", \"validation_stringency\": \"\\\"LENIENT\\\"\"}", |
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316 "tool_version": "1.136.0", |
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317 "type": "tool", |
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318 "uuid": "031b872f-1554-4a3e-bd3d-bc7a00b009fe", |
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319 "workflow_outputs": [ |
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320 { |
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321 "label": null, |
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322 "output_name": "outFile", |
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323 "uuid": "c74b2b4e-517e-400c-acdf-4360e31e7289" |
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324 } |
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325 ] |
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326 }, |
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327 "7": { |
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328 "annotation": "", |
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329 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1", |
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330 "id": 7, |
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331 "input_connections": { |
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332 "input_type|bam_input": { |
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333 "id": 6, |
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334 "output_name": "outFile" |
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335 }, |
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336 "reference_source|ref_file": { |
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337 "id": 0, |
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338 "output_name": "output" |
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339 } |
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340 }, |
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341 "inputs": [], |
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342 "label": null, |
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343 "name": "Map with BWA", |
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344 "outputs": [ |
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345 { |
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346 "name": "bam_output", |
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347 "type": "bam" |
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348 } |
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349 ], |
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350 "position": { |
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351 "left": 1610, |
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352 "top": 200 |
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353 }, |
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354 "post_job_actions": {}, |
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355 "tool_errors": null, |
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356 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.12.1", |
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357 "tool_state": "{\"__page__\": 0, \"input_type\": \"{\\\"bam_input\\\": null, \\\"input_type_selector\\\": \\\"paired_bam\\\", \\\"__current_case__\\\": 3, \\\"adv_bam_pe_options\\\": {\\\"__current_case__\\\": 1, \\\"adv_pe_options_selector\\\": \\\"do_not_set\\\"}}\", \"__rerun_remap_job_id__\": null, \"rg\": \"{\\\"rg_selector\\\": \\\"do_not_set\\\", \\\"__current_case__\\\": 3}\", \"analysis_type\": \"{\\\"analysis_type_selector\\\": \\\"illumina\\\", \\\"__current_case__\\\": 0}\", \"reference_source\": \"{\\\"ref_file\\\": null, \\\"reference_source_selector\\\": \\\"history\\\", \\\"__current_case__\\\": 1, \\\"index_a\\\": \\\"auto\\\"}\"}", |
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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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358 "tool_version": "0.7.12.1", |
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359 "type": "tool", |
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360 "uuid": "0a5b629f-5fbd-45c0-97cc-67a54ce242ae", |
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361 "workflow_outputs": [ |
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362 { |
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363 "label": null, |
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364 "output_name": "bam_output", |
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365 "uuid": "196d789d-3ed1-41a9-9e28-92e8135e8ee5" |
834c10340bce
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366 } |
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367 ] |
834c10340bce
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368 }, |
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369 "8": { |
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370 "annotation": "", |
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371 "content_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SortSam/1.136.1", |
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372 "id": 8, |
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373 "input_connections": { |
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374 "inputFile": { |
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375 "id": 7, |
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376 "output_name": "bam_output" |
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377 } |
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378 }, |
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379 "inputs": [], |
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380 "label": null, |
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381 "name": "SortSam", |
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382 "outputs": [ |
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383 { |
834c10340bce
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384 "name": "outFile", |
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385 "type": "bam" |
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386 } |
834c10340bce
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387 ], |
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388 "position": { |
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389 "left": 1938, |
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390 "top": 200 |
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391 }, |
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392 "post_job_actions": { |
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393 "DeleteIntermediatesActionoutFile": { |
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394 "action_arguments": {}, |
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395 "action_type": "DeleteIntermediatesAction", |
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396 "output_name": "outFile" |
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|
397 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
398 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
399 "tool_errors": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
400 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SortSam/1.136.1", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
401 "tool_state": "{\"inputFile\": \"null\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"sort_order\": \"\\\"queryname\\\"\", \"validation_stringency\": \"\\\"LENIENT\\\"\"}", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
402 "tool_version": "1.136.1", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
403 "type": "tool", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
404 "uuid": "efe328ad-11fa-4e3b-9c9f-6037c5ea4262", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
405 "workflow_outputs": [ |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
406 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
407 "label": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
408 "output_name": "outFile", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
409 "uuid": "5b0b2f60-116f-40ee-acf8-f5ddacfc4bc7" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
410 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
411 ] |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
412 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
413 "9": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
414 "annotation": "", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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changeset
|
415 "content_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
416 "id": 9, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
417 "input_connections": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
418 "input1": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
419 "id": 8, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
420 "output_name": "outFile" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
421 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
422 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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changeset
|
423 "inputs": [], |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
424 "label": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
425 "name": "BAM-to-SAM", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
426 "outputs": [ |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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changeset
|
427 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
428 "name": "output1", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
429 "type": "sam" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
430 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
431 ], |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
432 "position": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
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|
433 "left": 2266, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
434 "top": 200 |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
435 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
436 "post_job_actions": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
437 "DeleteIntermediatesActionoutput1": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
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|
438 "action_arguments": {}, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
439 "action_type": "DeleteIntermediatesAction", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
440 "output_name": "output1" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
441 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
442 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
443 "tool_errors": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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changeset
|
444 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
445 "tool_state": "{\"header\": \"\\\"-h\\\"\", \"__rerun_remap_job_id__\": null, \"input1\": \"null\", \"__page__\": 0}", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
446 "tool_version": "2.0", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
447 "type": "tool", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
448 "uuid": "e4900e78-feb5-4cd6-9194-3131e227388e", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
449 "workflow_outputs": [ |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
450 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
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|
451 "label": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
452 "output_name": "output1", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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diff
changeset
|
453 "uuid": "356bdab0-a907-4c07-a096-fab658a794ba" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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|
454 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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|
455 ] |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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|
456 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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|
457 "10": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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|
458 "annotation": "", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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459 "content_id": "testtoolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
460 "id": 10, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
461 "input_connections": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
462 "input1": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
463 "id": 0, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
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|
464 "output_name": "output" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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465 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
466 "sam_type|sampe_input2": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
467 "id": 9, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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changeset
|
468 "output_name": "output1" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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|
469 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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|
470 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
471 "inputs": [], |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
472 "label": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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changeset
|
473 "name": "Snip Finder", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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|
474 "outputs": [ |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
475 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
476 "name": "output1", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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|
477 "type": "tabular" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
478 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
479 ], |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
480 "position": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
481 "left": 2501, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
482 "top": 200 |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
483 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
484 "post_job_actions": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
485 "RenameDatasetActionoutput1": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
486 "action_arguments": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
487 "newname": "Snip Results" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
488 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
489 "action_type": "RenameDatasetAction", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
490 "output_name": "output1" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
491 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
492 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
493 "tool_errors": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
494 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
495 "tool_state": "{\"sam_type\": \"{\\\"best\\\": \\\"False\\\", \\\"mode\\\": \\\"paired_end\\\", \\\"__current_case__\\\": 1, \\\"sampe_input2\\\": null}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"null\"}", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
496 "tool_version": "0.1.0", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
497 "type": "tool", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
498 "uuid": "197e5f9d-b4e5-449b-9b2d-67c939f34e32", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
499 "workflow_outputs": [ |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
500 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
501 "label": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
502 "output_name": "output1", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
503 "uuid": "768cb726-399b-490e-82c1-8d523f7208ee" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
504 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
505 ] |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
506 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
507 "11": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
508 "annotation": "", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
509 "content_id": "testtoolshed.g2.bx.psu.edu/repos/chrisd/coverage_sampler/gene_fraction/0.1.0", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
510 "id": 11, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
511 "input_connections": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
512 "input1": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
513 "id": 0, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
514 "output_name": "output" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
515 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
516 "input2": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
517 "id": 9, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
518 "output_name": "output1" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
519 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
520 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
521 "inputs": [], |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
522 "label": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
523 "name": "Coverage Sampler", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
524 "outputs": [ |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
525 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
526 "name": "output1", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
527 "type": "tabular" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
528 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
529 ], |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
530 "position": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
531 "left": 2501, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
532 "top": 341 |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
533 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
534 "post_job_actions": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
535 "RenameDatasetActionoutput1": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
536 "action_arguments": { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
537 "newname": "Coverage Results" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
538 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
539 "action_type": "RenameDatasetAction", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
540 "output_name": "output1" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
541 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
542 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
543 "tool_errors": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
544 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/chrisd/coverage_sampler/gene_fraction/0.1.0", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
545 "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"min\": \"\\\"5\\\"\", \"max\": \"\\\"100\\\"\", \"__rerun_remap_job_id__\": null, \"samples\": \"\\\"1\\\"\", \"skip\": \"\\\"5\\\"\", \"threshold\": \"\\\"80\\\"\"}", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
546 "tool_version": "0.1.0", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
547 "type": "tool", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
548 "uuid": "8ffc98a9-82b8-429c-bd1d-fa4f24b22148", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
549 "workflow_outputs": [ |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
550 { |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
551 "label": null, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
552 "output_name": "output1", |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
553 "uuid": "207d0359-f140-47bb-9e2c-4882e2697e82" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
554 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
555 ] |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
diff
changeset
|
556 } |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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557 }, |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
parents:
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558 "uuid": "c3b33138-479d-4709-9a3a-8ba49bb06673" |
834c10340bce
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
chrisd
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559 } |