Mercurial > repos > chrisd > amrplusplus_workflow

changeset 0:834c10340bce draft

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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 4a836543109b7d5351b194e4cd3d59918086aacf-dirty
author chrisd
date Wed, 23 Mar 2016 21:49:48 -0400
parents
children 11cb57237849
files Galaxy-Workflow-AmrPlusPlus_PE.ga repository_dependencies.xml
diffstat 2 files changed, 563 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Galaxy-Workflow-AmrPlusPlus_PE.ga	Wed Mar 23 21:49:48 2016 -0400
@@ -0,0 +1,559 @@
+{
+    "a_galaxy_workflow": "true", 
+    "annotation": "", 
+    "format-version": "0.1", 
+    "name": "AmrPlusPlus_PE", 
+    "steps": {
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+            "id": 0, 
+            "input_connections": {}, 
+            "inputs": [
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+                    "description": "The genome to align non-host reads to", 
+                    "name": "AMR Database"
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+                "left": 391, 
+                "top": 200
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+            "tool_errors": null, 
+            "tool_id": null, 
+            "tool_state": "{\"name\": \"AMR Database\"}", 
+            "tool_version": null, 
+            "type": "data_input", 
+            "uuid": "66a5eb48-4b35-46cc-9b93-fd88d97d2218", 
+            "workflow_outputs": [
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+                    "output_name": "output", 
+                    "uuid": "d30b93c8-aa9f-49eb-801f-5a02e68a876b"
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+            "annotation": "Genome used to filter reads on", 
+            "content_id": null, 
+            "id": 1, 
+            "input_connections": {}, 
+            "inputs": [
+                {
+                    "description": "Genome used to filter reads on", 
+                    "name": "Host Genome"
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+            ], 
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+            "outputs": [], 
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+                "top": 285
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+            "tool_id": null, 
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+                "top": 370
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+            "tool_state": "{\"name\": \"FastQ Forward\"}", 
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+            "label": null, 
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+                }, 
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+                {
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+            "uuid": "e4900e78-feb5-4cd6-9194-3131e227388e", 
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+        "10": {
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+            }, 
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+                }
+            }, 
+            "tool_errors": null, 
+            "tool_id": "testtoolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0", 
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+            "tool_version": "0.1.0", 
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+            "uuid": "197e5f9d-b4e5-449b-9b2d-67c939f34e32", 
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+            "tool_errors": null, 
+            "tool_id": "testtoolshed.g2.bx.psu.edu/repos/chrisd/coverage_sampler/gene_fraction/0.1.0", 
+            "tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"min\": \"\\\"5\\\"\", \"max\": \"\\\"100\\\"\", \"__rerun_remap_job_id__\": null, \"samples\": \"\\\"1\\\"\", \"skip\": \"\\\"5\\\"\", \"threshold\": \"\\\"80\\\"\"}", 
+            "tool_version": "0.1.0", 
+            "type": "tool", 
+            "uuid": "8ffc98a9-82b8-429c-bd1d-fa4f24b22148", 
+            "workflow_outputs": [
+                {
+                    "label": null, 
+                    "output_name": "output1", 
+                    "uuid": "207d0359-f140-47bb-9e2c-4882e2697e82"
+                }
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+        }
+    }, 
+    "uuid": "c3b33138-479d-4709-9a3a-8ba49bb06673"
+}
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Wed Mar 23 21:49:48 2016 -0400
@@ -0,0 +1,4 @@
+<?xml version="1.0"?>
+<repositories description="A meta-package of tools needed to run the amrPlusPlus workflow">
+    <repository changeset_revision="84f9d3911454" name="amrplusplus_suite" owner="chrisd" toolshed="https://toolshed.g2.bx.psu.edu" />
+</repositories>