Mercurial > repos > chrisd > snipfinder

annotate test-data/samse.sam @ 1:d612ce3827b9 draft

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planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 60b005a83eab4984bc88a85a07ca2e416c3e507c-dirty
author chrisd
date Thu, 30 Jun 2016 02:39:23 -0400
parents d9be5a7e70f5
children
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d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
diff changeset
1 @SQ SN:chr2:172936693-172938111 LN:1418
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
diff changeset
2 @PG ID:bwa PN:bwa VN:0.7.12-r1039 CL:bwa samse ref.fa aln_sa.sai lane1.fq
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
diff changeset
3 chr2:172936693-172938111_860_1331_0:0:0_1:0:0_0 0 chr2:172936693-172938111 860 37 70M * 0 0 CCAGTAGCCTTTCTCCATCATGAAAATGGTTTCATTATAGGGTTTTTCATATTCTCTGACACCATCTACA 2222222222222222222222222222222222222222222222222222222222222222222222 XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:70
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
diff changeset
4 chr2:172936693-172938111_732_1257_1:0:0_4:0:0_1 0 chr2:172936693-172938111 732 37 70M * 0 0 CTCTGAACTTTCTTGTTAAAGTAATTTTCCTTTGTGGCTCTCATTCTTTTTCCCCCATTGAAGGCTATGA 2222222222222222222222222222222222222222222222222222222222222222222222 XT:A:U NM:i:1 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:5T64
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
diff changeset
5 chr2:172936693-172938111_742_1203_2:0:0_2:0:0_2 16 chr2:172936693-172938111 1134 37 70M * 0 0 CACTACAATTTTCCATCATTAAGACTAATAACACAGAGCCTAGTATAAATCAAGGGCAATAAAAAGAAAA 2222222222222222222222222222222222222222222222222222222222222222222222 XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:47C8G13
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
diff changeset
6 chr2:172936693-172938111_198_767_3:0:0_2:0:0_3 0 chr2:172936693-172938111 198 37 70M * 0 0 CTGGGAAAAGAAATTAAATGCATATCTCACTATCTTACTGTCCAAGAATATAATAGAAAAGAATTCAAAA 2222222222222222222222222222222222222222222222222222222222222222222222 XT:A:U NM:i:3 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:15T28T14T10
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
diff changeset
7 chr2:172936693-172938111_453_1032_2:0:0_1:0:0_4 0 chr2:172936693-172938111 453 37 70M * 0 0 TCTAAAGGGCATGTCATCCTTAGATTCTCTCTGAGAGGTAATTATCCTTTTCCTGTCACGGAACAACAAA 2222222222222222222222222222222222222222222222222222222222222222222222 XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16G4T48
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
diff changeset
8 chr2:172936693-172938111_49_530_3:0:0_2:0:0_5 0 chr2:172936693-172938111 49 37 70M * 0 0 AAACTCTTTGGGTTATATCTGAGAATCTTTTATTGAAGACTTTGAACAAAATTGTGTTTTTGACATTTTT 2222222222222222222222222222222222222222222222222222222222222222222222 XT:A:U NM:i:3 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:2T22G39G4
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
diff changeset
9 chr2:172936693-172938111_148_725_2:0:0_1:0:0_6 16 chr2:172936693-172938111 656 37 70M * 0 0 CCTCCCTCCAGATCTTTTTTTTAAACTTTTTTTCTGGTTATTTTTTCCCCTTTTTGTCTCTTCTTCCATT 2222222222222222222222222222222222222222222222222222222222222222222222 XT:A:U NM:i:1 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:15A54
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
diff changeset
10 chr2:172936693-172938111_198_788_0:0:0_0:0:0_7 0 chr2:172936693-172938111 198 37 70M * 0 0 CTGGGAAAAGAAATTTAATGCATATCTCACTATCTTACTGTCCATGAATATAATAGAAATGAATTCAAAA 2222222222222222222222222222222222222222222222222222222222222222222222 XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:70
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
diff changeset
11 chr2:172936693-172938111_839_1328_2:0:0_3:0:0_8 16 chr2:172936693-172938111 1259 37 70M * 0 0 GACTGAACTCTTTACAAAAAAGAGCCACACGCCACACCAACATGCTGGTGTACTCCAGCTAGTACTAGCA 2222222222222222222222222222222222222222222222222222222222222222222222 XT:A:U NM:i:3 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:4T40A4A19
d9be5a7e70f5 planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 8b7c17352f46ab4fce3bc13c3e63d4021fe83ae7
chrisd
parents:
diff changeset
12 chr2:172936693-172938111_892_1355_1:0:0_0:0:0_9 0 chr2:172936693-172938111 892 37 70M * 0 0 CATTATAGGGTTTTTCATATTCTCTGACACCATCTACACAGAGGAACAGGCGTGCAGCTGAGATGTGCTA 2222222222222222222222222222222222222222222222222222222222222222222222 XT:A:U NM:i:1 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:57A12