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Updated to use ngs-tools 0.1.8 with better exception handling and proper writing of error messages to sdterr.
author cjav
date Tue, 15 Oct 2013 13:08:22 -0400
parents 1a56bef47dcf
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<tool id="ngs-tools_merge_fna_qual" name="454's FNA/QUAL Merger (ngs-tools)" version="1.0.1">
	<description></description>
    <requirements>
        <requirement type="package" version="0.1.8">ngs-tools</requirement>
    </requirements>
    <command>
        ngs-tools merge-fna-qual --output $output_file $fasta_file $qual_file
    </command>
    <inputs>
        <param name="fasta_file" type="data" format="fasta" label="FASTA File" />
        <param name="qual_file" type="data" format="qual454" label="Quality Score File" />
    </inputs>
    <outputs>
        <data name="output_file" format="fastqsanger" />
    </outputs>
<help>

**What it does**

This tool joins a FASTA file to a Quality Score file, creating a single FASTQ block for each read.

Use this tool to convert 454-type output to FASTQ.

--------

This tool is based on `ngs-tools`__ by Carlos Borroto &lt;carlos.borroto@gmail.com&gt;.

 .. __: https://github.com/cjav/ngs-tools/
 
</help>
</tool>