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Updated to use ngs-tools 0.1.8 with better exception handling and proper writing of error messages to sdterr.
author cjav
date Tue, 15 Oct 2013 13:08:22 -0400
parents 1a56bef47dcf
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1 <tool id="ngs-tools_merge_fna_qual" name="454's FNA/QUAL Merger (ngs-tools)" version="1.0.1">
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2 <description></description>
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3 <requirements>
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4 <requirement type="package" version="0.1.8">ngs-tools</requirement>
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5 </requirements>
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6 <command>
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7 ngs-tools merge-fna-qual --output $output_file $fasta_file $qual_file
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8 </command>
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9 <inputs>
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10 <param name="fasta_file" type="data" format="fasta" label="FASTA File" />
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11 <param name="qual_file" type="data" format="qual454" label="Quality Score File" />
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12 </inputs>
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13 <outputs>
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14 <data name="output_file" format="fastqsanger" />
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15 </outputs>
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16 <help>
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17
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18 **What it does**
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19
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20 This tool joins a FASTA file to a Quality Score file, creating a single FASTQ block for each read.
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21
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22 Use this tool to convert 454-type output to FASTQ.
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23
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24 --------
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25
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26 This tool is based on `ngs-tools`__ by Carlos Borroto &lt;carlos.borroto@gmail.com&gt;.
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27
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28 .. __: https://github.com/cjav/ngs-tools/
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29
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30 </help>
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31 </tool>