annotate test-data/atm.log @ 0:8c7414c07367 draft

"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/fates-emerald commit f282701cadbb0c90c2c77a52579f18b44a357e24"

(datm_comp_init)  decomp   = 1d
(datm_comp_init)  iradsw   =        1
(datm_comp_init)  factorFn = null
(datm_comp_init)  restfilm = undefined
(datm_comp_init)  restfils = undefined
(datm_comp_init)  presaero =  T
(datm_comp_init)  force_prognostic_true =  F
(datm_comp_init)  wiso_datm   =  F
(datm_comp_init) inst_index  =         1
(datm_comp_init) inst_name   =  ATM
(datm_comp_init) inst_suffix =  
(shr_strdata_readnml) reading input namelist file: datm_in
(shr_stream_init) Reading file datm.streams.txt.CLM1PT.1x1_ALP1.Solar
(shr_file_freeUnit) unit   97 was not in use
(shr_stream_init) Reading file datm.streams.txt.CLM1PT.1x1_ALP1.Precip
(shr_file_freeUnit) unit   97 was not in use
(shr_stream_init) Reading file datm.streams.txt.CLM1PT.1x1_ALP1.TPQW
(shr_file_freeUnit) unit   97 was not in use
(shr_stream_init) Reading file datm.streams.txt.presaero.clim_2000
(shr_file_freeUnit) unit   97 was not in use
(shr_stream_init) Reading file datm.streams.txt.topo.observed
(shr_file_freeUnit) unit   97 was not in use
(datm_comp_init)  datm datamode = CLMNCEP
 (shr_strdata_init_streams)  stream            1
 (shr_strdata_init_streams)  filePath =            1 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/
 (shr_strdata_init_streams)  fileName =            1 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
 (shr_strdata_init_streams)  timeName =            1 time
 (shr_strdata_init_streams)   lonName =            1 xc
 (shr_strdata_init_streams)   latName =            1 yc
 (shr_strdata_init_streams)   hgtName =            1 unknownname
 (shr_strdata_init_streams)  maskName =            1 mask
 (shr_strdata_init_streams)  areaName =            1 area
 (shr_strdata_init_streams)  stream            2
 (shr_strdata_init_streams)  filePath =            2 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/
 (shr_strdata_init_streams)  fileName =            2 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
 (shr_strdata_init_streams)  timeName =            2 time
 (shr_strdata_init_streams)   lonName =            2 xc
 (shr_strdata_init_streams)   latName =            2 yc
 (shr_strdata_init_streams)   hgtName =            2 unknownname
 (shr_strdata_init_streams)  maskName =            2 mask
 (shr_strdata_init_streams)  areaName =            2 area
 (shr_strdata_init_streams)  stream            3
 (shr_strdata_init_streams)  filePath =            3 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/
 (shr_strdata_init_streams)  fileName =            3 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
 (shr_strdata_init_streams)  timeName =            3 time
 (shr_strdata_init_streams)   lonName =            3 xc
 (shr_strdata_init_streams)   latName =            3 yc
 (shr_strdata_init_streams)   hgtName =            3 unknownname
 (shr_strdata_init_streams)  maskName =            3 mask
 (shr_strdata_init_streams)  areaName =            3 area
 (shr_strdata_init_streams)  stream            4
 (shr_strdata_init_streams)  filePath =            4 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/
 (shr_strdata_init_streams)  fileName =            4 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc
 (shr_strdata_init_streams)  timeName =            4 time
 (shr_strdata_init_streams)   lonName =            4 lon
 (shr_strdata_init_streams)   latName =            4 lat
 (shr_strdata_init_streams)   hgtName =            4 unknownname
 (shr_strdata_init_streams)  maskName =            4 mask
 (shr_strdata_init_streams)  areaName =            4 area
 (shr_strdata_init_streams)  stream            5
 (shr_strdata_init_streams)  filePath =            5 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/
 (shr_strdata_init_streams)  fileName =            5 /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/ALP1/topodata_ALP1.nc
 (shr_strdata_init_streams)  timeName =            5 time
 (shr_strdata_init_streams)   lonName =            5 LONGXY
 (shr_strdata_init_streams)   latName =            5 LATIXY
 (shr_strdata_init_streams)   hgtName =            5 unknownname
 (shr_strdata_init_streams)  maskName =            5 mask
 (shr_strdata_init_streams)  areaName =            5 area
(shr_strdata_print) ----------------------------------------------------------
(shr_strdata_print) name        = ATM data
(shr_strdata_print) dataMode    = CLMNCEP
(shr_strdata_print) domainFile  = /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/share/domains/ALP1/domain.lnd.ALP1.200422.nc
(shr_strdata_print) nxg         =      1
(shr_strdata_print) nyg         =      1
(shr_strdata_print) nzg         =     -1
(shr_strdata_print) calendar    = NO_LEAP
(shr_strdata_print) io_type     =      6
(shr_strdata_print) eccen       =  1.000000E+36
(shr_strdata_print) mvelpp      =  1.000000E+36
(shr_strdata_print) lambm0      =  1.000000E+36
(shr_strdata_print) obliqr      =  1.000000E+36
(shr_strdata_print) nstreams    =      5
(shr_strdata_print) pio_iotype  =      6
(shr_strdata_print)   streams ( 1) = datm.streams.txt.CLM1PT.1x1_ALP1.Solar 1901 1901 1950
(shr_strdata_print)   taxMode ( 1) = cycle
(shr_strdata_print)   dtlimit ( 1) =  1.500000E+00
(shr_strdata_print)   strnxg  ( 1) =      1
(shr_strdata_print)   strnyg  ( 1) =      1
(shr_strdata_print)   strnzg  ( 1) =     -1
(shr_strdata_print)   dofill  ( 1) =  F
(shr_strdata_print)   fillalgo( 1) = nn
(shr_strdata_print)   fillmask( 1) = nomask
(shr_strdata_print)   fillread( 1) = NOT_SET
(shr_strdata_print)   fillwrit( 1) = NOT_SET
(shr_strdata_print)   domaps  ( 1) =  F
(shr_strdata_print)   mapalgo ( 1) = nn
(shr_strdata_print)   mapmask ( 1) = nomask
(shr_strdata_print)   mapread ( 1) = NOT_SET
(shr_strdata_print)   mapwrit ( 1) = NOT_SET
(shr_strdata_print)   tintalgo( 1) = coszen
(shr_strdata_print)   readmode( 1) = single
(shr_strdata_print)  
(shr_strdata_print)   streams ( 2) = datm.streams.txt.CLM1PT.1x1_ALP1.Precip 1901 1901 1950
(shr_strdata_print)   taxMode ( 2) = cycle
(shr_strdata_print)   dtlimit ( 2) =  1.500000E+00
(shr_strdata_print)   strnxg  ( 2) =      1
(shr_strdata_print)   strnyg  ( 2) =      1
(shr_strdata_print)   strnzg  ( 2) =     -1
(shr_strdata_print)   dofill  ( 2) =  F
(shr_strdata_print)   fillalgo( 2) = nn
(shr_strdata_print)   fillmask( 2) = nomask
(shr_strdata_print)   fillread( 2) = NOT_SET
(shr_strdata_print)   fillwrit( 2) = NOT_SET
(shr_strdata_print)   domaps  ( 2) =  F
(shr_strdata_print)   mapalgo ( 2) = nn
(shr_strdata_print)   mapmask ( 2) = nomask
(shr_strdata_print)   mapread ( 2) = NOT_SET
(shr_strdata_print)   mapwrit ( 2) = NOT_SET
(shr_strdata_print)   tintalgo( 2) = nearest
(shr_strdata_print)   readmode( 2) = single
(shr_strdata_print)  
(shr_strdata_print)   streams ( 3) = datm.streams.txt.CLM1PT.1x1_ALP1.TPQW 1901 1901 1950
(shr_strdata_print)   taxMode ( 3) = cycle
(shr_strdata_print)   dtlimit ( 3) =  1.500000E+00
(shr_strdata_print)   strnxg  ( 3) =      1
(shr_strdata_print)   strnyg  ( 3) =      1
(shr_strdata_print)   strnzg  ( 3) =     -1
(shr_strdata_print)   dofill  ( 3) =  F
(shr_strdata_print)   fillalgo( 3) = nn
(shr_strdata_print)   fillmask( 3) = nomask
(shr_strdata_print)   fillread( 3) = NOT_SET
(shr_strdata_print)   fillwrit( 3) = NOT_SET
(shr_strdata_print)   domaps  ( 3) =  F
(shr_strdata_print)   mapalgo ( 3) = nn
(shr_strdata_print)   mapmask ( 3) = nomask
(shr_strdata_print)   mapread ( 3) = NOT_SET
(shr_strdata_print)   mapwrit ( 3) = NOT_SET
(shr_strdata_print)   tintalgo( 3) = linear
(shr_strdata_print)   readmode( 3) = single
(shr_strdata_print)  
(shr_strdata_print)   streams ( 4) = datm.streams.txt.presaero.clim_2000 1 2000 2000
(shr_strdata_print)   taxMode ( 4) = cycle
(shr_strdata_print)   dtlimit ( 4) =  1.500000E+00
(shr_strdata_print)   strnxg  ( 4) =      1
(shr_strdata_print)   strnyg  ( 4) =      1
(shr_strdata_print)   strnzg  ( 4) =     -1
(shr_strdata_print)   dofill  ( 4) =  F
(shr_strdata_print)   fillalgo( 4) = nn
(shr_strdata_print)   fillmask( 4) = nomask
(shr_strdata_print)   fillread( 4) = NOT_SET
(shr_strdata_print)   fillwrit( 4) = NOT_SET
(shr_strdata_print)   domaps  ( 4) =  F
(shr_strdata_print)   mapalgo ( 4) = nn
(shr_strdata_print)   mapmask ( 4) = nomask
(shr_strdata_print)   mapread ( 4) = NOT_SET
(shr_strdata_print)   mapwrit ( 4) = NOT_SET
(shr_strdata_print)   tintalgo( 4) = linear
(shr_strdata_print)   readmode( 4) = single
(shr_strdata_print)  
(shr_strdata_print)   streams ( 5) = datm.streams.txt.topo.observed 1 1 1
(shr_strdata_print)   taxMode ( 5) = cycle
(shr_strdata_print)   dtlimit ( 5) =  1.500000E+00
(shr_strdata_print)   strnxg  ( 5) =      1
(shr_strdata_print)   strnyg  ( 5) =      1
(shr_strdata_print)   strnzg  ( 5) =     -1
(shr_strdata_print)   dofill  ( 5) =  F
(shr_strdata_print)   fillalgo( 5) = nn
(shr_strdata_print)   fillmask( 5) = nomask
(shr_strdata_print)   fillread( 5) = NOT_SET
(shr_strdata_print)   fillwrit( 5) = NOT_SET
(shr_strdata_print)   domaps  ( 5) =  F
(shr_strdata_print)   mapalgo ( 5) = nn
(shr_strdata_print)   mapmask ( 5) = nomask
(shr_strdata_print)   mapread ( 5) = NOT_SET
(shr_strdata_print)   mapwrit ( 5) = NOT_SET
(shr_strdata_print)   tintalgo( 5) = lower
(shr_strdata_print)   readmode( 5) = single
(shr_strdata_print)  
(shr_strdata_print) nvectors    =      0
(shr_strdata_print) ----------------------------------------------------------
(datm_comp_init)  initialize gsmaps
(datm_comp_init) copy domains
(datm_comp_init) allocate AVs
(datm_comp_init)  flds_strm = strm_swdn:strm_precn:strm_tbot:strm_wind:strm_pbot:strm_shum:strm_lwdn
(shr_dmodel_readstrm) open   : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc
(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc       1
(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc       2
(shr_dmodel_readstrm) open   : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1949-12.nc
(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1949-12.nc     248
(shr_dmodel_readstrm) close  : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1949-12.nc
(shr_dmodel_readstrm) open   : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc
(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc       1
(shr_dmodel_readstrm) open   : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1949-12.nc
(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1949-12.nc     248
(shr_dmodel_readstrm) close  : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1949-12.nc
(shr_dmodel_readstrm) open   : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc
(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/ALP1/clm1pt_ALP1_1950-01.nc       1
(shr_dmodel_readstrm) open   : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc
(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc    1824
(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/cam/chem/trop_mozart_aero/aero/ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc    1813
(shr_dmodel_readstrm) open   : /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/ALP1/topodata_ALP1.nc
(shr_dmodel_readstrm) file lb: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/ALP1/topodata_ALP1.nc       1
(shr_dmodel_readstrm) file ub: /opt/uio/tmp/tmpqayq__51/job_working_directory/000/2/working/inputdata/atm/datm7/topo_forcing/ALP1/topodata_ALP1.nc       1
 (datm_comp_run) max values =    266.23443603515625        0.0000000000000000        0.0000000000000000     
(datm_comp_run) atm: model date 20000101       0s
(datm_comp_init) datm_comp_init done
(datm_comp_run)  writing test.datm.rs1.2000-01-01-01800.bin20000101    1800s
(shr_stream_restWrite) case name        : test
(shr_stream_restWrite) case description : SDATM strdata
(shr_stream_restWrite) File created     : 2020-10-20 14:24:33
(shr_stream_restWrite) Number of streams     5
(shr_stream_restWrite) * stream     1 first file name = clm1pt_ALP1_1901-01.nc
(shr_stream_restWrite) * stream     1 first have data =   T
(shr_stream_restWrite) * stream     1 first nt        =      248
(shr_stream_restWrite) * stream     1 first date secs = 19010101       0
(shr_stream_restWrite) * stream     1 last  date secs = 19010131   75600
(shr_stream_restWrite) * stream     2 first file name = clm1pt_ALP1_1901-01.nc
(shr_stream_restWrite) * stream     2 first have data =   T
(shr_stream_restWrite) * stream     2 first nt        =      248
(shr_stream_restWrite) * stream     2 first date secs = 19010101    5400
(shr_stream_restWrite) * stream     2 last  date secs = 19010131   81000
(shr_stream_restWrite) * stream     3 first file name = clm1pt_ALP1_1901-01.nc
(shr_stream_restWrite) * stream     3 first have data =   T
(shr_stream_restWrite) * stream     3 first nt        =      248
(shr_stream_restWrite) * stream     3 first date secs = 19010101    5400
(shr_stream_restWrite) * stream     3 last  date secs = 19010131   81000
(shr_stream_restWrite) * stream     4 first file name = ALP1/aerosoldep_WACCM.ensmean_monthly_hist_1849-2015_0.9x1.25_CMIP6_c180926_ALP1.nc
(shr_stream_restWrite) * stream     4 first have data =   T
(shr_stream_restWrite) * stream     4 first nt        =     2004
(shr_stream_restWrite) * stream     4 first date secs = 18490116   43200
(shr_stream_restWrite) * stream     4 last  date secs = 20151216   43200
(shr_stream_restWrite) * stream     5 first file name = ALP1/topodata_ALP1.nc
(shr_stream_restWrite) * stream     5 first have data =   T
(shr_stream_restWrite) * stream     5 first nt        =        1
(shr_stream_restWrite) * stream     5 first date secs =    10101       0
(shr_stream_restWrite) * stream     5 last  date secs =    10101       0
(datm_comp_run) atm: model date 20000101    1800s
(datm_comp_final) -------------------------------------------------------------------------
(datm_comp_final) atm: end of main integration loop
(datm_comp_final) -------------------------------------------------------------------------