Mercurial > repos > climate > psy_maps
annotate psy-maps.xml @ 1:706666d912d5 draft default tip
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
author | climate |
---|---|
date | Sat, 05 Oct 2019 17:11:18 -0400 |
parents | db8d76da4174 |
children |
rev | line source |
---|---|
1
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
1 <tool id="psy_maps" name="map plot" version="1.2.1"> |
0
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
2 <description>gridded (lat/lon) netCDF data</description> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
3 <requirements> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
4 <requirement type="package" version="3">python</requirement> |
1
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
5 <requirement type="package" version="1.2.1">psyplot</requirement> |
0
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
6 <requirement type="package" version="1.2.0">psy-maps</requirement> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
7 <requirement type="package" version="1.2.0">psy-reg</requirement> |
1
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
8 <requirement type="package" version="1.4.2">netcdf4</requirement> |
0
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
9 </requirements> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
10 <command detect_errors="exit_code"><![CDATA[ |
1
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
11 HOME=`pwd` && |
0
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
12 python3 '$__tool_directory__/psymap_simple.py' |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
13 '$ifilename' '$variable' |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
14 --proj '$adv.projection' |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
15 --cmap '$adv.colormap' |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
16 --output image.png |
1
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
17 #if str($adv.multiple_plot.selector) == 'yes' |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
18 --time '$adv.multiple_plot.time' |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
19 --format '$adv.multiple_plot.format' |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
20 --ncol '$adv.multiple_plot.ncol' |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
21 --nrow '$adv.multiple_plot.nrow' |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
22 #end if |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
23 #if str($adv.multiple_plot.title).strip() |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
24 --title '$adv.multiple_plot.title' |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
25 #end if |
0
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
26 ]]></command> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
27 <inputs> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
28 <param name="ifilename" type="data" format="netcdf" label="input with geographical coordinates (netCDF format)"></param> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
29 <param name="variable" type="text" value="TS" label="variable name as given in the netCDF file" /> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
30 <section name="adv" title="Advanced Options" expanded="false"> |
1
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
31 <conditional name="multiple_plot"> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
32 <param name="selector" type="select" label="multiple times"> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
33 <option value="yes">yes</option> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
34 <option value="no" selected="true">no</option> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
35 </param> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
36 <when value="yes"> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
37 <param name="time" type="text" value="0" label="comma separated list of indexes for fields to plot" /> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
38 <param name="format" type="text" value="%Y-%m-%d %H:%M:%S" label="date and time format" /> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
39 <param name="ncol" type="integer" value="1" min="1" max="4" label="number of columns for subplot grid" /> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
40 <param name="nrow" type="integer" value="1" min="1" max="20" label="number of rows for subplot grid" /> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
41 <param name="title" type="text" value="" label="subplot title (repeated on each subplot)" /> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
42 </when> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
43 <when value="no"> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
44 <param name="title" type="text" value="" label="plot title" /> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
45 </when> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
46 </conditional> |
0
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
47 <param name="projection" type="select"> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
48 <option value="" selected="true">PlateCarree</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
49 <option value="robin">Robinson</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
50 <option value="moll">Mollweide</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
51 <option value="geo">Geostationary</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
52 <option value="northpole">NorthPolarStereo</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
53 <option value="southpole">SouthPolarStereo</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
54 <option value="ortho">Orthographic</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
55 <option value="stereo">Stereographic</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
56 <option value="near">NearsidePerspective</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
57 </param> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
58 <param name="colormap" type="select"> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
59 <option value="Accent">Accent</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
60 <option value="Blues">Blues</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
61 <option value="BrBG">BrBG</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
62 <option value="BuGn">BuGn</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
63 <option value="BuPu">BuPu</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
64 <option value="CMRmap">CMRmap</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
65 <option value="Dark2">Dark2</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
66 <option value="GnBu">GnBu</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
67 <option value="Greens">Greens</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
68 <option value="Greys">Greys</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
69 <option value="OrRd">OrRd</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
70 <option value="Oranges">Oranges</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
71 <option value="PRGn">PRGn</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
72 <option value="Paired">Paired</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
73 <option value="Pastel1">Pastel1</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
74 <option value="Pastel2">Pastel2</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
75 <option value="PiYG">PiYG</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
76 <option value="PuBu">PuBu</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
77 <option value="PuBuGn">PuBuGn</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
78 <option value="PuOr">PuOr</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
79 <option value="PuRd">PuRd</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
80 <option value="Purples">Purples</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
81 <option value="RdBu">RdBu</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
82 <option value="RdGy">RdGy</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
83 <option value="RdPu">RdPu</option> |
1
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
84 <option value="RdBu_r">RdBu_r</option> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
85 <option value="RdGy_r">RdGy_r</option> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
86 <option value="RdPu_r">RdPu_r</option> |
0
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
87 <option value="RdYlBu">RdYlBu</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
88 <option value="RdYlGn">RdYlGn</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
89 <option value="Reds">Reds</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
90 <option value="Set1">Set1</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
91 <option value="Set2">Set2</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
92 <option value="Set3">Set3</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
93 <option value="Spectral">Spectral</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
94 <option value="Wistia">Wistia</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
95 <option value="YlGn">YlGn</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
96 <option value="YlGnBu">YlGnBu</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
97 <option value="YlOrBr">YlOrBr</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
98 <option value="YlOrRd">YlOrRd</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
99 <option value="afmhot">afmhot</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
100 <option value="autumn">autumn</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
101 <option value="binary">binary</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
102 <option value="bone">bone</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
103 <option value="brg">brg</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
104 <option value="bwr">bwr</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
105 <option value="cool">cool</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
106 <option value="coolwarm">coolwarm</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
107 <option value="copper">copper</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
108 <option value="cubehelix">cubehelix</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
109 <option value="flag">flag</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
110 <option value="gist_earth">gist_earth</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
111 <option value="gist_gray">gist_gray</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
112 <option value="gist_heat">gist_heat</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
113 <option value="gist_ncar">gist_ncar</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
114 <option value="gist_rainbow">gist_rainbow</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
115 <option value="gist_stern">gist_stern</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
116 <option value="gist_yarg">gist_yarg</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
117 <option value="gnuplot">gnuplot</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
118 <option value="gnuplot2">gnuplot2</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
119 <option value="gray">gray</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
120 <option value="hot">hot</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
121 <option value="hsv">hsv</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
122 <option value="jet" selected="true">jet</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
123 <option value="nipy_spectral">nipy_spectral</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
124 <option value="ocean">ocean</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
125 <option value="pink">pink</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
126 <option value="prism">prism</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
127 <option value="rainbow">rainbow</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
128 <option value="seismic">seismic</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
129 <option value="spring">spring</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
130 <option value="summer">summer</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
131 <option value="tab10">tab10</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
132 <option value="tab20">tab20</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
133 <option value="tab20b">tab20b</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
134 <option value="tab20c">tab20c</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
135 <option value="terrain">terrain</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
136 <option value="winter">winter</option> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
137 </param> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
138 </section> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
139 </inputs> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
140 <outputs> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
141 <data name="ofilename" format="png" from_work_dir="image.png"/> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
142 </outputs> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
143 <tests> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
144 <test> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
145 <param name="ifilename" value="TS.f2000.T31T31.control.cam.h0.0014-12.nc" /> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
146 <param name="variable" value="TS" /> |
1
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
147 <param name="projection" value="" /> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
148 <param name="colormap" value="jet" /> |
0
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
149 <output name="ofilename" ftype="png" file="TS.f2000.T31T31.control.cam.h0.0014-12.png" compare="sim_size" delta="500"/> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
150 </test> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
151 <test> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
152 <param name="ifilename" value="TS.f2000.T31T31.control.cam.h0.0014-12.nc" /> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
153 <param name="variable" value="TS" /> |
1
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
154 <param name="projection" value="ortho" /> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
155 <param name="colormap" value="RdBu_r" /> |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
156 <output name="ofilename" ftype="png" file="TS.f2000.T31T31.control.cam.h0.0014-12_ortho.png" compare="sim_size" delta="500"/> |
0
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
157 </test> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
158 </tests> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
159 <help><![CDATA[ |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
160 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
161 **Visualization on a map with psyplot** |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
162 ========================================= |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
163 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
164 This tool wraps the functionality of ``psyplot.plot.mapplot``. |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
165 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
166 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
167 .. class:: infomark |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
168 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
169 The wrappers aims at providing the same functionality as ``psyplot.plot.mapplot`` but it has some limitations. |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
170 The input file must be in netCDF format and must contain 2D arrays with geographical coordinatates |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
171 (latitudes, longitudes) given in degrees. |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
172 TODO: Fill in help. |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
173 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
174 **What it does** |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
175 ---------------- |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
176 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
177 This tools creates an image (png format) corresponding to the visualization on a geographical map of a variable extracted from a |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
178 netCDF file (input file). By default, the projection is ``PlateCarree`` and colormap is ``jet``. These settings can be changed in *Advanced settings*. |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
179 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
180 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
181 **Usage** |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
182 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
183 :: |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
184 |
1
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
185 usage: psymap_simple.py [-h] [--proj PROJ] [--cmap CMAP] [--output OUTPUT] [--time TIME] |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
186 [--format FORMAT] [--title TITLE] [--ncol NCOL] [--nrow NROW] [-v] input varname |
0
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
187 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
188 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
189 Positional arguments: |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
190 ~~~~~~~~~~~~~~~~~~~~~ |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
191 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
192 - **input**: input filename with geographical coordinates (netCDF format) |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
193 - **varname**: Specify which variable to plot (case sensitive) |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
194 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
195 Optional arguments: |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
196 ~~~~~~~~~~~~~~~~~~~~~ |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
197 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
198 -h, --help show this help message and exit |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
199 --proj PROJ Specify the projection on which we draw |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
200 --cmap CMAP Specify which colormap to use for plotting |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
201 --output OUTPUT output filename to store resulting image (png format) |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
202 -v, --verbose switch on verbose mode |
1
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
203 --time TIME list of times to plot for multiple plots |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
204 --format FORMAT format for date/time (default is Month d, yyyy) |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
205 --title TITLE plot title |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
206 --ncol NCOL number of columns for multiple plots |
706666d912d5
"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"
climate
parents:
0
diff
changeset
|
207 --nrow NROW number of rows for multiple plots |
0
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
208 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
209 It uses psy-maps, a python package to generate plots. More information about |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
210 psyplot and psy-maps can be found at https://psyplot.readthedocs.io/projects/psy-maps/en/latest/ |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
211 |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
212 ]]></help> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
213 <citations> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
214 </citations> |
db8d76da4174
planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit c1362af034361b6fb869411f1ea928388f230d72
climate
parents:
diff
changeset
|
215 </tool> |