psy_maps: psy-maps.xml comparison

comparison psy-maps.xml @ 1:706666d912d5 draft default tip

"planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/psy-maps commit 4803d769c7b0b37fa80c69bd7327f6789cd3c6bf"

author	climate
date	Sat, 05 Oct 2019 17:11:18 -0400
parents	db8d76da4174
children

comparison

equal deleted inserted replaced

-:db8d76da4174
+:706666d912d5
-<tool id="psy_maps" name="map plot" version="1.2.0">
+<tool id="psy_maps" name="map plot" version="1.2.1">
 <description>gridded (lat/lon) netCDF data</description>
 <requirements>
 <requirement type="package" version="3">python</requirement>
+<requirement type="package" version="1.2.1">psyplot</requirement>
 <requirement type="package" version="1.2.0">psy-maps</requirement>
 <requirement type="package" version="1.2.0">psy-reg</requirement>
-<requirement type="package" version="1.2.2">psyplot-gui</requirement>
+<requirement type="package" version="1.4.2">netcdf4</requirement>
-<requirement type="package" version="1.4.1">netcdf4</requirement>
 </requirements>
 <command detect_errors="exit_code"><![CDATA[
+HOME=`pwd`  &&
 python3 '$__tool_directory__/psymap_simple.py'
 '$ifilename' '$variable'
 --proj '$adv.projection'
 --cmap '$adv.colormap'
 --output image.png
+#if str($adv.multiple_plot.selector) == 'yes'
+--time '$adv.multiple_plot.time'
+--format '$adv.multiple_plot.format'
+--ncol '$adv.multiple_plot.ncol'
+--nrow '$adv.multiple_plot.nrow'
+#end if
+#if str($adv.multiple_plot.title).strip()
+--title '$adv.multiple_plot.title'
+#end if
 ]]></command>
 <inputs>
 <param name="ifilename" type="data" format="netcdf" label="input with geographical coordinates (netCDF format)"></param>
 <param name="variable" type="text" value="TS" label="variable name as given in the netCDF file" />
 <section name="adv" title="Advanced Options" expanded="false">
+<conditional name="multiple_plot">
+<param name="selector" type="select" label="multiple times">
+<option value="yes">yes</option>
+<option value="no" selected="true">no</option>
+</param>
+<when value="yes">
+<param name="time" type="text" value="0" label="comma separated list of indexes for fields to plot" />
+<param name="format" type="text" value="%Y-%m-%d %H:%M:%S" label="date and time format" />
+<param name="ncol" type="integer" value="1" min="1" max="4" label="number of columns for subplot grid" />
+<param name="nrow" type="integer" value="1" min="1" max="20" label="number of rows for subplot grid" />
+<param name="title" type="text" value="" label="subplot title (repeated on each subplot)" />
+</when>
+<when value="no">
+<param name="title" type="text" value="" label="plot title" />
+</when>
+</conditional>
 <param name="projection" type="select">
 <option value="" selected="true">PlateCarree</option>
 <option value="robin">Robinson</option>
 <option value="moll">Mollweide</option>
 <option value="geo">Geostationary</option>
 <option value="PuRd">PuRd</option>
 <option value="Purples">Purples</option>
 <option value="RdBu">RdBu</option>
 <option value="RdGy">RdGy</option>
 <option value="RdPu">RdPu</option>
+<option value="RdBu_r">RdBu_r</option>
+<option value="RdGy_r">RdGy_r</option>
+<option value="RdPu_r">RdPu_r</option>
 <option value="RdYlBu">RdYlBu</option>
 <option value="RdYlGn">RdYlGn</option>
 <option value="Reds">Reds</option>
 <option value="Set1">Set1</option>
 <option value="Set2">Set2</option>
 </outputs>
 <tests>
 <test>
 <param name="ifilename" value="TS.f2000.T31T31.control.cam.h0.0014-12.nc" />
 <param name="variable" value="TS" />
-<param name="adv.projection" value="" />
+<param name="projection" value="" />
-<param name="adv.colormap" value="jet" />
+<param name="colormap" value="jet" />
 <output name="ofilename" ftype="png" file="TS.f2000.T31T31.control.cam.h0.0014-12.png" compare="sim_size" delta="500"/>
 </test>
 <test>
 <param name="ifilename" value="TS.f2000.T31T31.control.cam.h0.0014-12.nc" />
 <param name="variable" value="TS" />
-<param name="adv.projection" value="ortho" />
+<param name="projection" value="ortho" />
-<param name="adv.colormap" value="jet" />
+<param name="colormap" value="RdBu_r" />
-<output name="ofilename" ftype="png" file="TS.f2000.T31T31.control.cam.h0.0014-12.png" compare="sim_size" delta="500"/>
+<output name="ofilename" ftype="png" file="TS.f2000.T31T31.control.cam.h0.0014-12_ortho.png" compare="sim_size" delta="500"/>
 </test>
 </tests>
 <help><![CDATA[
 **Visualization on a map with psyplot**
 **Usage**
 ::
-usage: psymap_simple.py [-h] [--proj PROJ] [--cmap CMAP] [--output OUTPUT] [-v] input varname
+usage: psymap_simple.py [-h] [--proj PROJ] [--cmap CMAP] [--output OUTPUT] [--time TIME]
+[--format FORMAT] [--title TITLE] [--ncol NCOL] [--nrow NROW] [-v] input varname
 Positional arguments:
 ~~~~~~~~~~~~~~~~~~~~~
 -h, --help       show this help message and exit
 --proj PROJ      Specify the projection on which we draw
 --cmap CMAP      Specify which colormap to use for plotting
 --output OUTPUT  output filename to store resulting image (png format)
 -v, --verbose    switch on verbose mode
+--time TIME      list of times to plot for multiple plots
+--format FORMAT  format for date/time (default is Month d, yyyy)
+--title TITLE    plot title
+--ncol NCOL      number of columns for multiple plots
+--nrow NROW      number of rows for multiple plots
 It uses psy-maps, a python package to generate plots. More information about
 psyplot and psy-maps can be found at https://psyplot.readthedocs.io/projects/psy-maps/en/latest/
 ]]></help>

Mercurial > repos > climate > psy_maps

comparison psy-maps.xml @ 1:706666d912d5 draft default tip