annotate clustalomega/clustal-omega-1.0.2/src/clustal/Makefile.in @ 1:bc707542e5de

Uploaded
author clustalomega
date Thu, 21 Jul 2011 13:35:08 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
1 # Makefile.in generated by automake 1.11.1 from Makefile.am.
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
2 # @configure_input@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
3
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
5 # 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation,
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
6 # Inc.
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
7 # This Makefile.in is free software; the Free Software Foundation
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
8 # gives unlimited permission to copy and/or distribute it,
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
9 # with or without modifications, as long as this notice is preserved.
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
10
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
11 # This program is distributed in the hope that it will be useful,
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
12 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
13 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
14 # PARTICULAR PURPOSE.
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
15
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
16 @SET_MAKE@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
17
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
18
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
19 VPATH = @srcdir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
20 pkgdatadir = $(datadir)/@PACKAGE@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
21 pkgincludedir = $(includedir)/@PACKAGE@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
22 pkglibdir = $(libdir)/@PACKAGE@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
23 pkglibexecdir = $(libexecdir)/@PACKAGE@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
24 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
25 install_sh_DATA = $(install_sh) -c -m 644
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
26 install_sh_PROGRAM = $(install_sh) -c
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
27 install_sh_SCRIPT = $(install_sh) -c
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
28 INSTALL_HEADER = $(INSTALL_DATA)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
29 transform = $(program_transform_name)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
30 NORMAL_INSTALL = :
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
31 PRE_INSTALL = :
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
32 POST_INSTALL = :
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
33 NORMAL_UNINSTALL = :
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
34 PRE_UNINSTALL = :
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
35 POST_UNINSTALL = :
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
36 build_triplet = @build@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
37 host_triplet = @host@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
38 subdir = src/clustal
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
39 DIST_COMMON = $(library_include_HEADERS) $(srcdir)/Makefile.am \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
40 $(srcdir)/Makefile.in
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
41 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
42 am__aclocal_m4_deps = $(top_srcdir)/m4/ax_prefix_config_h.m4 \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
43 $(top_srcdir)/m4/libtool.m4 $(top_srcdir)/m4/ltoptions.m4 \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
44 $(top_srcdir)/m4/ltsugar.m4 $(top_srcdir)/m4/ltversion.m4 \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
45 $(top_srcdir)/m4/lt~obsolete.m4 $(top_srcdir)/m4/ax_openmp.m4 \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
46 $(top_srcdir)/configure.ac
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
47 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
48 $(ACLOCAL_M4)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
49 mkinstalldirs = $(install_sh) -d
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
50 CONFIG_HEADER = $(top_builddir)/src/config.h
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
51 CONFIG_CLEAN_FILES =
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
52 CONFIG_CLEAN_VPATH_FILES =
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
53 LTLIBRARIES = $(noinst_LTLIBRARIES)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
54 libclustal_la_LIBADD =
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
55 am_libclustal_la_OBJECTS = hhalign_wrapper.lo ktuple_pair.lo list.lo \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
56 log.lo muscle_upgma.lo muscle_tree.lo mbed.lo pair_dist.lo \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
57 progress.lo seq.lo symmatrix.lo tree.lo util.lo weights.lo
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
58 libclustal_la_OBJECTS = $(am_libclustal_la_OBJECTS)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
59 DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
60 depcomp = $(SHELL) $(top_srcdir)/depcomp
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
61 am__depfiles_maybe = depfiles
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
62 am__mv = mv -f
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
63 COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
64 $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
65 LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
66 --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
67 $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
68 CCLD = $(CC)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
69 LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
70 --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
71 $(LDFLAGS) -o $@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
72 SOURCES = $(libclustal_la_SOURCES)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
73 DIST_SOURCES = $(libclustal_la_SOURCES)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
74 am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
75 am__vpath_adj = case $$p in \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
76 $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
77 *) f=$$p;; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
78 esac;
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
79 am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
80 am__install_max = 40
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
81 am__nobase_strip_setup = \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
82 srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
83 am__nobase_strip = \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
84 for p in $$list; do echo "$$p"; done | sed -e "s|$$srcdirstrip/||"
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
85 am__nobase_list = $(am__nobase_strip_setup); \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
86 for p in $$list; do echo "$$p $$p"; done | \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
87 sed "s| $$srcdirstrip/| |;"' / .*\//!s/ .*/ ./; s,\( .*\)/[^/]*$$,\1,' | \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
88 $(AWK) 'BEGIN { files["."] = "" } { files[$$2] = files[$$2] " " $$1; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
89 if (++n[$$2] == $(am__install_max)) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
90 { print $$2, files[$$2]; n[$$2] = 0; files[$$2] = "" } } \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
91 END { for (dir in files) print dir, files[dir] }'
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
92 am__base_list = \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
93 sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
94 sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g'
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
95 am__installdirs = "$(DESTDIR)$(library_includedir)"
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
96 HEADERS = $(library_include_HEADERS)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
97 ETAGS = etags
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
98 CTAGS = ctags
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
99 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
100 ACLOCAL = @ACLOCAL@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
101 AMTAR = @AMTAR@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
102 AM_CFLAGS = @OPENMP_CFLAGS@ @AM_CFLAGS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
103 AM_CXXFLAGS = @AM_CXXFLAGS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
104 AM_LDFLAGS = @AM_LDFLAGS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
105 AR = @AR@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
106 AUTOCONF = @AUTOCONF@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
107 AUTOHEADER = @AUTOHEADER@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
108 AUTOMAKE = @AUTOMAKE@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
109 AWK = @AWK@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
110 CC = @CC@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
111 CCDEPMODE = @CCDEPMODE@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
112 CFLAGS = @CFLAGS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
113 CPP = @CPP@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
114 CPPFLAGS = @CPPFLAGS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
115 CXX = @CXX@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
116 CXXCPP = @CXXCPP@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
117 CXXDEPMODE = @CXXDEPMODE@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
118 CXXFLAGS = @CXXFLAGS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
119 CYGPATH_W = @CYGPATH_W@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
120 DEFS = @DEFS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
121 DEPDIR = @DEPDIR@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
122 DSYMUTIL = @DSYMUTIL@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
123 DUMPBIN = @DUMPBIN@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
124 ECHO_C = @ECHO_C@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
125 ECHO_N = @ECHO_N@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
126 ECHO_T = @ECHO_T@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
127 EGREP = @EGREP@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
128 EXEEXT = @EXEEXT@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
129 FGREP = @FGREP@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
130 GREP = @GREP@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
131 INSTALL = @INSTALL@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
132 INSTALL_DATA = @INSTALL_DATA@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
133 INSTALL_PROGRAM = @INSTALL_PROGRAM@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
134 INSTALL_SCRIPT = @INSTALL_SCRIPT@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
135 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
136 LD = @LD@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
137 LDFLAGS = @LDFLAGS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
138 LIBOBJS = @LIBOBJS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
139 LIBS = @LIBS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
140 LIBTOOL = @LIBTOOL@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
141 LIPO = @LIPO@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
142 LN_S = @LN_S@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
143 LTLIBOBJS = @LTLIBOBJS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
144 MAKEINFO = @MAKEINFO@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
145 MKDIR_P = @MKDIR_P@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
146 NM = @NM@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
147 NMEDIT = @NMEDIT@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
148 OBJDUMP = @OBJDUMP@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
149 OBJEXT = @OBJEXT@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
150 OPENMP_CFLAGS = @OPENMP_CFLAGS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
151 OPENMP_CXXFLAGS = @OPENMP_CXXFLAGS@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
152 OTOOL = @OTOOL@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
153 OTOOL64 = @OTOOL64@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
154 PACKAGE = @PACKAGE@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
155 PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
156 PACKAGE_CODENAME = @PACKAGE_CODENAME@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
157 PACKAGE_NAME = @PACKAGE_NAME@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
158 PACKAGE_STRING = @PACKAGE_STRING@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
159 PACKAGE_TARNAME = @PACKAGE_TARNAME@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
160 PACKAGE_URL = @PACKAGE_URL@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
161 PACKAGE_VERSION = @PACKAGE_VERSION@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
162 PATH_SEPARATOR = @PATH_SEPARATOR@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
163 RANLIB = @RANLIB@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
164 SED = @SED@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
165 SET_MAKE = @SET_MAKE@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
166 SHELL = @SHELL@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
167 STRIP = @STRIP@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
168 VERSION = @VERSION@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
169 abs_builddir = @abs_builddir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
170 abs_srcdir = @abs_srcdir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
171 abs_top_builddir = @abs_top_builddir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
172 abs_top_srcdir = @abs_top_srcdir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
173 ac_ct_CC = @ac_ct_CC@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
174 ac_ct_CXX = @ac_ct_CXX@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
175 ac_ct_DUMPBIN = @ac_ct_DUMPBIN@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
176 am__include = @am__include@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
177 am__leading_dot = @am__leading_dot@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
178 am__quote = @am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
179 am__tar = @am__tar@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
180 am__untar = @am__untar@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
181 bindir = @bindir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
182 build = @build@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
183 build_alias = @build_alias@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
184 build_cpu = @build_cpu@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
185 build_os = @build_os@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
186 build_vendor = @build_vendor@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
187 builddir = @builddir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
188 datadir = @datadir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
189 datarootdir = @datarootdir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
190 docdir = @docdir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
191 dvidir = @dvidir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
192 exec_prefix = @exec_prefix@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
193 host = @host@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
194 host_alias = @host_alias@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
195 host_cpu = @host_cpu@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
196 host_os = @host_os@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
197 host_vendor = @host_vendor@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
198 htmldir = @htmldir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
199 includedir = @includedir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
200 infodir = @infodir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
201 install_sh = @install_sh@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
202 libdir = @libdir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
203 libexecdir = @libexecdir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
204 localedir = @localedir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
205 localstatedir = @localstatedir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
206 lt_ECHO = @lt_ECHO@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
207 mandir = @mandir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
208 mkdir_p = @mkdir_p@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
209 oldincludedir = @oldincludedir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
210 pdfdir = @pdfdir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
211 prefix = @prefix@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
212 program_transform_name = @program_transform_name@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
213 psdir = @psdir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
214 sbindir = @sbindir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
215 sharedstatedir = @sharedstatedir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
216 srcdir = @srcdir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
217 sysconfdir = @sysconfdir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
218 target_alias = @target_alias@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
219 top_build_prefix = @top_build_prefix@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
220 top_builddir = @top_builddir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
221 top_srcdir = @top_srcdir@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
222 noinst_LTLIBRARIES = libclustal.la
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
223 libclustal_la_SOURCES = \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
224 hhalign_wrapper.c hhalign_wrapper.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
225 ktuple_pair.c ktuple_pair.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
226 list.c list.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
227 log.c log.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
228 muscle_upgma.c muscle_upgma.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
229 muscle_tree.c muscle_tree.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
230 mbed.c mbed.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
231 pair_dist.h pair_dist.c \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
232 progress.c progress.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
233 queue.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
234 seq.c seq.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
235 symmatrix.c symmatrix.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
236 tree.c tree.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
237 util.c util.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
238 weights.c weights.h
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
239
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
240 library_includedir = $(includedir)/clustalo/clustal
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
241 library_include_HEADERS = \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
242 hhalign_wrapper.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
243 ktuple_pair.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
244 log.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
245 mbed.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
246 muscle_tree.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
247 pair_dist.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
248 progress.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
249 seq.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
250 symmatrix.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
251 tree.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
252 util.h \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
253 weights.h
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
254
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
255 all: all-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
256
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
257 .SUFFIXES:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
258 .SUFFIXES: .c .lo .o .obj
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
259 $(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
260 @for dep in $?; do \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
261 case '$(am__configure_deps)' in \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
262 *$$dep*) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
263 ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
264 && { if test -f $@; then exit 0; else break; fi; }; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
265 exit 1;; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
266 esac; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
267 done; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
268 echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu src/clustal/Makefile'; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
269 $(am__cd) $(top_srcdir) && \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
270 $(AUTOMAKE) --gnu src/clustal/Makefile
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
271 .PRECIOUS: Makefile
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
272 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
273 @case '$?' in \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
274 *config.status*) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
275 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
276 *) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
277 echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
278 cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
279 esac;
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
280
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
281 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
282 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
283
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
284 $(top_srcdir)/configure: $(am__configure_deps)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
285 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
286 $(ACLOCAL_M4): $(am__aclocal_m4_deps)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
287 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
288 $(am__aclocal_m4_deps):
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
289
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
290 clean-noinstLTLIBRARIES:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
291 -test -z "$(noinst_LTLIBRARIES)" || rm -f $(noinst_LTLIBRARIES)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
292 @list='$(noinst_LTLIBRARIES)'; for p in $$list; do \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
293 dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
294 test "$$dir" != "$$p" || dir=.; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
295 echo "rm -f \"$${dir}/so_locations\""; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
296 rm -f "$${dir}/so_locations"; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
297 done
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
298 libclustal.la: $(libclustal_la_OBJECTS) $(libclustal_la_DEPENDENCIES)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
299 $(LINK) $(libclustal_la_OBJECTS) $(libclustal_la_LIBADD) $(LIBS)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
300
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
301 mostlyclean-compile:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
302 -rm -f *.$(OBJEXT)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
303
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
304 distclean-compile:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
305 -rm -f *.tab.c
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
306
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
307 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hhalign_wrapper.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
308 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/ktuple_pair.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
309 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/list.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
310 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/log.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
311 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/mbed.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
312 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/muscle_tree.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
313 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/muscle_upgma.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
314 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/pair_dist.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
315 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/progress.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
316 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/seq.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
317 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/symmatrix.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
318 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/tree.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
319 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/util.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
320 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/weights.Plo@am__quote@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
321
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
322 .c.o:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
323 @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
324 @am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
325 @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
326 @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
327 @am__fastdepCC_FALSE@ $(COMPILE) -c $<
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
328
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
329 .c.obj:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
330 @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
331 @am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
332 @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
333 @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
334 @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'`
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
335
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
336 .c.lo:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
337 @am__fastdepCC_TRUE@ $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
338 @am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
339 @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
340 @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
341 @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $<
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
342
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
343 mostlyclean-libtool:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
344 -rm -f *.lo
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
345
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
346 clean-libtool:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
347 -rm -rf .libs _libs
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
348 install-library_includeHEADERS: $(library_include_HEADERS)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
349 @$(NORMAL_INSTALL)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
350 test -z "$(library_includedir)" || $(MKDIR_P) "$(DESTDIR)$(library_includedir)"
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
351 @list='$(library_include_HEADERS)'; test -n "$(library_includedir)" || list=; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
352 for p in $$list; do \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
353 if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
354 echo "$$d$$p"; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
355 done | $(am__base_list) | \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
356 while read files; do \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
357 echo " $(INSTALL_HEADER) $$files '$(DESTDIR)$(library_includedir)'"; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
358 $(INSTALL_HEADER) $$files "$(DESTDIR)$(library_includedir)" || exit $$?; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
359 done
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
360
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
361 uninstall-library_includeHEADERS:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
362 @$(NORMAL_UNINSTALL)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
363 @list='$(library_include_HEADERS)'; test -n "$(library_includedir)" || list=; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
364 files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
365 test -n "$$files" || exit 0; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
366 echo " ( cd '$(DESTDIR)$(library_includedir)' && rm -f" $$files ")"; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
367 cd "$(DESTDIR)$(library_includedir)" && rm -f $$files
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
368
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
369 ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
370 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
371 unique=`for i in $$list; do \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
372 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
373 done | \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
374 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
375 END { if (nonempty) { for (i in files) print i; }; }'`; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
376 mkid -fID $$unique
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
377 tags: TAGS
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
378
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
379 TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
380 $(TAGS_FILES) $(LISP)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
381 set x; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
382 here=`pwd`; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
383 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
384 unique=`for i in $$list; do \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
385 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
386 done | \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
387 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
388 END { if (nonempty) { for (i in files) print i; }; }'`; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
389 shift; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
390 if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
391 test -n "$$unique" || unique=$$empty_fix; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
392 if test $$# -gt 0; then \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
393 $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
394 "$$@" $$unique; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
395 else \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
396 $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
397 $$unique; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
398 fi; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
399 fi
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
400 ctags: CTAGS
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
401 CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
402 $(TAGS_FILES) $(LISP)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
403 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
404 unique=`for i in $$list; do \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
405 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
406 done | \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
407 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
408 END { if (nonempty) { for (i in files) print i; }; }'`; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
409 test -z "$(CTAGS_ARGS)$$unique" \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
410 || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
411 $$unique
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
412
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
413 GTAGS:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
414 here=`$(am__cd) $(top_builddir) && pwd` \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
415 && $(am__cd) $(top_srcdir) \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
416 && gtags -i $(GTAGS_ARGS) "$$here"
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
417
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
418 distclean-tags:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
419 -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
420
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
421 distdir: $(DISTFILES)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
422 @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
423 topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
424 list='$(DISTFILES)'; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
425 dist_files=`for file in $$list; do echo $$file; done | \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
426 sed -e "s|^$$srcdirstrip/||;t" \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
427 -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
428 case $$dist_files in \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
429 */*) $(MKDIR_P) `echo "$$dist_files" | \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
430 sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
431 sort -u` ;; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
432 esac; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
433 for file in $$dist_files; do \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
434 if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
435 if test -d $$d/$$file; then \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
436 dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
437 if test -d "$(distdir)/$$file"; then \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
438 find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
439 fi; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
440 if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
441 cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
442 find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
443 fi; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
444 cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
445 else \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
446 test -f "$(distdir)/$$file" \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
447 || cp -p $$d/$$file "$(distdir)/$$file" \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
448 || exit 1; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
449 fi; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
450 done
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
451 check-am: all-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
452 check: check-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
453 all-am: Makefile $(LTLIBRARIES) $(HEADERS)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
454 installdirs:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
455 for dir in "$(DESTDIR)$(library_includedir)"; do \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
456 test -z "$$dir" || $(MKDIR_P) "$$dir"; \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
457 done
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
458 install: install-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
459 install-exec: install-exec-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
460 install-data: install-data-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
461 uninstall: uninstall-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
462
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
463 install-am: all-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
464 @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
465
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
466 installcheck: installcheck-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
467 install-strip:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
468 $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
469 install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
470 `test -z '$(STRIP)' || \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
471 echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
472 mostlyclean-generic:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
473
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
474 clean-generic:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
475
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
476 distclean-generic:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
477 -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
478 -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
479
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
480 maintainer-clean-generic:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
481 @echo "This command is intended for maintainers to use"
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
482 @echo "it deletes files that may require special tools to rebuild."
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
483 clean: clean-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
484
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
485 clean-am: clean-generic clean-libtool clean-noinstLTLIBRARIES \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
486 mostlyclean-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
487
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
488 distclean: distclean-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
489 -rm -rf ./$(DEPDIR)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
490 -rm -f Makefile
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
491 distclean-am: clean-am distclean-compile distclean-generic \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
492 distclean-tags
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
493
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
494 dvi: dvi-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
495
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
496 dvi-am:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
497
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
498 html: html-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
499
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
500 html-am:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
501
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
502 info: info-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
503
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
504 info-am:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
505
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
506 install-data-am: install-library_includeHEADERS
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
507
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
508 install-dvi: install-dvi-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
509
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
510 install-dvi-am:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
511
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
512 install-exec-am:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
513
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
514 install-html: install-html-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
515
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
516 install-html-am:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
517
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
518 install-info: install-info-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
519
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
520 install-info-am:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
521
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
522 install-man:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
523
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
524 install-pdf: install-pdf-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
525
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
526 install-pdf-am:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
527
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
528 install-ps: install-ps-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
529
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
530 install-ps-am:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
531
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
532 installcheck-am:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
533
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
534 maintainer-clean: maintainer-clean-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
535 -rm -rf ./$(DEPDIR)
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
536 -rm -f Makefile
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
537 maintainer-clean-am: distclean-am maintainer-clean-generic
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
538
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
539 mostlyclean: mostlyclean-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
540
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
541 mostlyclean-am: mostlyclean-compile mostlyclean-generic \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
542 mostlyclean-libtool
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
543
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
544 pdf: pdf-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
545
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
546 pdf-am:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
547
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
548 ps: ps-am
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
549
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
550 ps-am:
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
551
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
552 uninstall-am: uninstall-library_includeHEADERS
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
553
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
554 .MAKE: install-am install-strip
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
555
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
556 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-generic \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
557 clean-libtool clean-noinstLTLIBRARIES ctags distclean \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
558 distclean-compile distclean-generic distclean-libtool \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
559 distclean-tags distdir dvi dvi-am html html-am info info-am \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
560 install install-am install-data install-data-am install-dvi \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
561 install-dvi-am install-exec install-exec-am install-html \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
562 install-html-am install-info install-info-am \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
563 install-library_includeHEADERS install-man install-pdf \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
564 install-pdf-am install-ps install-ps-am install-strip \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
565 installcheck installcheck-am installdirs maintainer-clean \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
566 maintainer-clean-generic mostlyclean mostlyclean-compile \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
567 mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
568 tags uninstall uninstall-am uninstall-library_includeHEADERS
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
569
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
570
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
571 # Tell versions [3.59,3.63) of GNU make to not export all variables.
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
572 # Otherwise a system limit (for SysV at least) may be exceeded.
bc707542e5de Uploaded
clustalomega
parents:
diff changeset
573 .NOEXPORT: