annotate clustalomega/clustal-omega-0.2.0/Doxyfile @ 0:ff1768533a07

Migrated tool version 0.2 from old tool shed archive to new tool shed repository
author clustalomega
date Tue, 07 Jun 2011 17:04:25 -0400
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1 # Doxyfile 1.5.8
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2
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3 # This file describes the settings to be used by the documentation system
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4 # doxygen (www.doxygen.org) for a project
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5 #
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6 # All text after a hash (#) is considered a comment and will be ignored
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7 # The format is:
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8 # TAG = value [value, ...]
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9 # For lists items can also be appended using:
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10 # TAG += value [value, ...]
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11 # Values that contain spaces should be placed between quotes (" ")
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12
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13 #---------------------------------------------------------------------------
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14 # Project related configuration options
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15 #---------------------------------------------------------------------------
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16
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17 # This tag specifies the encoding used for all characters in the config file
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18 # that follow. The default is UTF-8 which is also the encoding used for all
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19 # text before the first occurrence of this tag. Doxygen uses libiconv (or the
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20 # iconv built into libc) for the transcoding. See
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21 # http://www.gnu.org/software/libiconv for the list of possible encodings.
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22
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23 DOXYFILE_ENCODING = UTF-8
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24
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25 # The PROJECT_NAME tag is a single word (or a sequence of words surrounded
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26 # by quotes) that should identify the project.
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27
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28 PROJECT_NAME = "Clustal Omega"
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29
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30 # The PROJECT_NUMBER tag can be used to enter a project or revision number.
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31 # This could be handy for archiving the generated documentation or
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32 # if some version control system is used.
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33
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34 PROJECT_NUMBER = 0.2.0
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35
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36 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute)
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37 # base path where the generated documentation will be put.
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38 # If a relative path is entered, it will be relative to the location
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39 # where doxygen was started. If left blank the current directory will be used.
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40
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41 OUTPUT_DIRECTORY = ./doc/doxygen/
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42
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43 # If the CREATE_SUBDIRS tag is set to YES, then doxygen will create
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44 # 4096 sub-directories (in 2 levels) under the output directory of each output
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45 # format and will distribute the generated files over these directories.
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46 # Enabling this option can be useful when feeding doxygen a huge amount of
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47 # source files, where putting all generated files in the same directory would
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48 # otherwise cause performance problems for the file system.
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49
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50 CREATE_SUBDIRS = NO
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51
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52 # The OUTPUT_LANGUAGE tag is used to specify the language in which all
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53 # documentation generated by doxygen is written. Doxygen will use this
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54 # information to generate all constant output in the proper language.
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55 # The default language is English, other supported languages are:
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56 # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
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57 # Croatian, Czech, Danish, Dutch, Farsi, Finnish, French, German, Greek,
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58 # Hungarian, Italian, Japanese, Japanese-en (Japanese with English messages),
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59 # Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian, Polish,
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60 # Portuguese, Romanian, Russian, Serbian, Serbian-Cyrilic, Slovak, Slovene,
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61 # Spanish, Swedish, and Ukrainian.
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62
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63 OUTPUT_LANGUAGE = English
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64
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65 # If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will
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66 # include brief member descriptions after the members that are listed in
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67 # the file and class documentation (similar to JavaDoc).
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68 # Set to NO to disable this.
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69
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70 BRIEF_MEMBER_DESC = YES
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71
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72 # If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend
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73 # the brief description of a member or function before the detailed description.
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74 # Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
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75 # brief descriptions will be completely suppressed.
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76
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77 REPEAT_BRIEF = YES
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78
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79 # This tag implements a quasi-intelligent brief description abbreviator
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80 # that is used to form the text in various listings. Each string
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81 # in this list, if found as the leading text of the brief description, will be
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82 # stripped from the text and the result after processing the whole list, is
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83 # used as the annotated text. Otherwise, the brief description is used as-is.
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84 # If left blank, the following values are used ("$name" is automatically
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85 # replaced with the name of the entity): "The $name class" "The $name widget"
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86 # "The $name file" "is" "provides" "specifies" "contains"
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87 # "represents" "a" "an" "the"
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88
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89 ABBREVIATE_BRIEF =
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90
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91 # If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then
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92 # Doxygen will generate a detailed section even if there is only a brief
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93 # description.
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94
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95 ALWAYS_DETAILED_SEC = NO
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96
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97 # If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all
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98 # inherited members of a class in the documentation of that class as if those
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99 # members were ordinary class members. Constructors, destructors and assignment
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100 # operators of the base classes will not be shown.
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101
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102 INLINE_INHERITED_MEMB = NO
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103
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104 # If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full
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105 # path before files name in the file list and in the header files. If set
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106 # to NO the shortest path that makes the file name unique will be used.
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107
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108 FULL_PATH_NAMES = YES
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109
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110 # If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag
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111 # can be used to strip a user-defined part of the path. Stripping is
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112 # only done if one of the specified strings matches the left-hand part of
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113 # the path. The tag can be used to show relative paths in the file list.
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114 # If left blank the directory from which doxygen is run is used as the
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115 # path to strip.
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116
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117 STRIP_FROM_PATH =
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118
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119 # The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of
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120 # the path mentioned in the documentation of a class, which tells
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121 # the reader which header file to include in order to use a class.
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122 # If left blank only the name of the header file containing the class
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123 # definition is used. Otherwise one should specify the include paths that
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124 # are normally passed to the compiler using the -I flag.
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125
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126 STRIP_FROM_INC_PATH =
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127
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128 # If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter
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129 # (but less readable) file names. This can be useful is your file systems
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130 # doesn't support long names like on DOS, Mac, or CD-ROM.
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131
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132 SHORT_NAMES = NO
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133
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134 # If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen
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135 # will interpret the first line (until the first dot) of a JavaDoc-style
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136 # comment as the brief description. If set to NO, the JavaDoc
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137 # comments will behave just like regular Qt-style comments
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138 # (thus requiring an explicit @brief command for a brief description.)
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139
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140 JAVADOC_AUTOBRIEF = NO
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141
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142 # If the QT_AUTOBRIEF tag is set to YES then Doxygen will
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143 # interpret the first line (until the first dot) of a Qt-style
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144 # comment as the brief description. If set to NO, the comments
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145 # will behave just like regular Qt-style comments (thus requiring
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146 # an explicit \brief command for a brief description.)
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147
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148 QT_AUTOBRIEF = NO
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149
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150 # The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen
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151 # treat a multi-line C++ special comment block (i.e. a block of //! or ///
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152 # comments) as a brief description. This used to be the default behaviour.
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153 # The new default is to treat a multi-line C++ comment block as a detailed
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154 # description. Set this tag to YES if you prefer the old behaviour instead.
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155
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156 MULTILINE_CPP_IS_BRIEF = NO
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157
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158 # If the INHERIT_DOCS tag is set to YES (the default) then an undocumented
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159 # member inherits the documentation from any documented member that it
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160 # re-implements.
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161
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162 INHERIT_DOCS = YES
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163
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164 # If the SEPARATE_MEMBER_PAGES tag is set to YES, then doxygen will produce
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165 # a new page for each member. If set to NO, the documentation of a member will
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166 # be part of the file/class/namespace that contains it.
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167
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168 SEPARATE_MEMBER_PAGES = NO
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169
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170 # The TAB_SIZE tag can be used to set the number of spaces in a tab.
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171 # Doxygen uses this value to replace tabs by spaces in code fragments.
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172
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173 TAB_SIZE = 4
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174
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175 # This tag can be used to specify a number of aliases that acts
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176 # as commands in the documentation. An alias has the form "name=value".
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177 # For example adding "sideeffect=\par Side Effects:\n" will allow you to
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178 # put the command \sideeffect (or @sideeffect) in the documentation, which
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179 # will result in a user-defined paragraph with heading "Side Effects:".
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180 # You can put \n's in the value part of an alias to insert newlines.
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181
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182 ALIASES =
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183
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184 # Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C
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185 # sources only. Doxygen will then generate output that is more tailored for C.
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186 # For instance, some of the names that are used will be different. The list
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187 # of all members will be omitted, etc.
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188
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189 OPTIMIZE_OUTPUT_FOR_C = YES
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190
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191 # Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java
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192 # sources only. Doxygen will then generate output that is more tailored for
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193 # Java. For instance, namespaces will be presented as packages, qualified
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194 # scopes will look different, etc.
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195
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196 OPTIMIZE_OUTPUT_JAVA = NO
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197
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198 # Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran
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199 # sources only. Doxygen will then generate output that is more tailored for
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200 # Fortran.
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201
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202 OPTIMIZE_FOR_FORTRAN = NO
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203
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204 # Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL
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205 # sources. Doxygen will then generate output that is tailored for
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206 # VHDL.
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207
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208 OPTIMIZE_OUTPUT_VHDL = NO
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209
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210 # Doxygen selects the parser to use depending on the extension of the files it parses.
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211 # With this tag you can assign which parser to use for a given extension.
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212 # Doxygen has a built-in mapping, but you can override or extend it using this tag.
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213 # The format is ext=language, where ext is a file extension, and language is one of
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214 # the parsers supported by doxygen: IDL, Java, Javascript, C#, C, C++, D, PHP,
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215 # Objective-C, Python, Fortran, VHDL, C, C++. For instance to make doxygen treat
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216 # .inc files as Fortran files (default is PHP), and .f files as C (default is Fortran),
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217 # use: inc=Fortran f=C
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218
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219 EXTENSION_MAPPING =
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220
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221 # If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
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222 # to include (a tag file for) the STL sources as input, then you should
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223 # set this tag to YES in order to let doxygen match functions declarations and
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224 # definitions whose arguments contain STL classes (e.g. func(std::string); v.s.
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225 # func(std::string) {}). This also make the inheritance and collaboration
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226 # diagrams that involve STL classes more complete and accurate.
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227
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228 BUILTIN_STL_SUPPORT = NO
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229
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230 # If you use Microsoft's C++/CLI language, you should set this option to YES to
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231 # enable parsing support.
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232
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233 CPP_CLI_SUPPORT = NO
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234
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235 # Set the SIP_SUPPORT tag to YES if your project consists of sip sources only.
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236 # Doxygen will parse them like normal C++ but will assume all classes use public
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237 # instead of private inheritance when no explicit protection keyword is present.
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238
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239 SIP_SUPPORT = NO
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240
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241 # For Microsoft's IDL there are propget and propput attributes to indicate getter
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242 # and setter methods for a property. Setting this option to YES (the default)
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243 # will make doxygen to replace the get and set methods by a property in the
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244 # documentation. This will only work if the methods are indeed getting or
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245 # setting a simple type. If this is not the case, or you want to show the
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246 # methods anyway, you should set this option to NO.
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247
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248 IDL_PROPERTY_SUPPORT = YES
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249
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250 # If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
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251 # tag is set to YES, then doxygen will reuse the documentation of the first
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252 # member in the group (if any) for the other members of the group. By default
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253 # all members of a group must be documented explicitly.
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254
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255 DISTRIBUTE_GROUP_DOC = NO
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256
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257 # Set the SUBGROUPING tag to YES (the default) to allow class member groups of
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258 # the same type (for instance a group of public functions) to be put as a
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259 # subgroup of that type (e.g. under the Public Functions section). Set it to
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260 # NO to prevent subgrouping. Alternatively, this can be done per class using
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261 # the \nosubgrouping command.
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262
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263 SUBGROUPING = YES
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264
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265 # When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum
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266 # is documented as struct, union, or enum with the name of the typedef. So
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267 # typedef struct TypeS {} TypeT, will appear in the documentation as a struct
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268 # with name TypeT. When disabled the typedef will appear as a member of a file,
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269 # namespace, or class. And the struct will be named TypeS. This can typically
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270 # be useful for C code in case the coding convention dictates that all compound
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271 # types are typedef'ed and only the typedef is referenced, never the tag name.
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272
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273 TYPEDEF_HIDES_STRUCT = NO
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274
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275 # The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
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276 # determine which symbols to keep in memory and which to flush to disk.
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277 # When the cache is full, less often used symbols will be written to disk.
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278 # For small to medium size projects (<1000 input files) the default value is
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279 # probably good enough. For larger projects a too small cache size can cause
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280 # doxygen to be busy swapping symbols to and from disk most of the time
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281 # causing a significant performance penality.
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282 # If the system has enough physical memory increasing the cache will improve the
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283 # performance by keeping more symbols in memory. Note that the value works on
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284 # a logarithmic scale so increasing the size by one will rougly double the
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285 # memory usage. The cache size is given by this formula:
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286 # 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
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287 # corresponding to a cache size of 2^16 = 65536 symbols
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288
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289 SYMBOL_CACHE_SIZE = 0
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290
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291 #---------------------------------------------------------------------------
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292 # Build related configuration options
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293 #---------------------------------------------------------------------------
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294
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295 # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
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296 # documentation are documented, even if no documentation was available.
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297 # Private class members and static file members will be hidden unless
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298 # the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
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299
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300 EXTRACT_ALL = YES
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301
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302 # If the EXTRACT_PRIVATE tag is set to YES all private members of a class
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clustalomega
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303 # will be included in the documentation.
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clustalomega
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304
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clustalomega
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305 EXTRACT_PRIVATE = NO
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clustalomega
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diff changeset
306
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clustalomega
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diff changeset
307 # If the EXTRACT_STATIC tag is set to YES all static members of a file
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clustalomega
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diff changeset
308 # will be included in the documentation.
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309
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clustalomega
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diff changeset
310 EXTRACT_STATIC = NO
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311
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312 # If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs)
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clustalomega
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313 # defined locally in source files will be included in the documentation.
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clustalomega
parents:
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314 # If set to NO only classes defined in header files are included.
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315
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clustalomega
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316 EXTRACT_LOCAL_CLASSES = YES
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diff changeset
317
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clustalomega
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318 # This flag is only useful for Objective-C code. When set to YES local
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clustalomega
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319 # methods, which are defined in the implementation section but not in
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clustalomega
parents:
diff changeset
320 # the interface are included in the documentation.
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clustalomega
parents:
diff changeset
321 # If set to NO (the default) only methods in the interface are included.
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clustalomega
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322
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clustalomega
parents:
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323 EXTRACT_LOCAL_METHODS = NO
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clustalomega
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324
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clustalomega
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325 # If this flag is set to YES, the members of anonymous namespaces will be
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clustalomega
parents:
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326 # extracted and appear in the documentation as a namespace called
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clustalomega
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diff changeset
327 # 'anonymous_namespace{file}', where file will be replaced with the base
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clustalomega
parents:
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328 # name of the file that contains the anonymous namespace. By default
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clustalomega
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329 # anonymous namespace are hidden.
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clustalomega
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330
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clustalomega
parents:
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331 EXTRACT_ANON_NSPACES = NO
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clustalomega
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332
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clustalomega
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333 # If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all
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clustalomega
parents:
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334 # undocumented members of documented classes, files or namespaces.
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clustalomega
parents:
diff changeset
335 # If set to NO (the default) these members will be included in the
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clustalomega
parents:
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336 # various overviews, but no documentation section is generated.
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clustalomega
parents:
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337 # This option has no effect if EXTRACT_ALL is enabled.
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clustalomega
parents:
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338
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clustalomega
parents:
diff changeset
339 HIDE_UNDOC_MEMBERS = NO
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clustalomega
parents:
diff changeset
340
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clustalomega
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341 # If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all
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clustalomega
parents:
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342 # undocumented classes that are normally visible in the class hierarchy.
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clustalomega
parents:
diff changeset
343 # If set to NO (the default) these classes will be included in the various
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clustalomega
parents:
diff changeset
344 # overviews. This option has no effect if EXTRACT_ALL is enabled.
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clustalomega
parents:
diff changeset
345
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
346 HIDE_UNDOC_CLASSES = NO
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clustalomega
parents:
diff changeset
347
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clustalomega
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348 # If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all
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clustalomega
parents:
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349 # friend (class|struct|union) declarations.
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clustalomega
parents:
diff changeset
350 # If set to NO (the default) these declarations will be included in the
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clustalomega
parents:
diff changeset
351 # documentation.
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clustalomega
parents:
diff changeset
352
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clustalomega
parents:
diff changeset
353 HIDE_FRIEND_COMPOUNDS = NO
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clustalomega
parents:
diff changeset
354
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clustalomega
parents:
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355 # If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any
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clustalomega
parents:
diff changeset
356 # documentation blocks found inside the body of a function.
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clustalomega
parents:
diff changeset
357 # If set to NO (the default) these blocks will be appended to the
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clustalomega
parents:
diff changeset
358 # function's detailed documentation block.
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clustalomega
parents:
diff changeset
359
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clustalomega
parents:
diff changeset
360 HIDE_IN_BODY_DOCS = NO
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clustalomega
parents:
diff changeset
361
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clustalomega
parents:
diff changeset
362 # The INTERNAL_DOCS tag determines if documentation
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clustalomega
parents:
diff changeset
363 # that is typed after a \internal command is included. If the tag is set
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clustalomega
parents:
diff changeset
364 # to NO (the default) then the documentation will be excluded.
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clustalomega
parents:
diff changeset
365 # Set it to YES to include the internal documentation.
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clustalomega
parents:
diff changeset
366
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clustalomega
parents:
diff changeset
367 INTERNAL_DOCS = NO
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clustalomega
parents:
diff changeset
368
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clustalomega
parents:
diff changeset
369 # If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate
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clustalomega
parents:
diff changeset
370 # file names in lower-case letters. If set to YES upper-case letters are also
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clustalomega
parents:
diff changeset
371 # allowed. This is useful if you have classes or files whose names only differ
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clustalomega
parents:
diff changeset
372 # in case and if your file system supports case sensitive file names. Windows
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clustalomega
parents:
diff changeset
373 # and Mac users are advised to set this option to NO.
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clustalomega
parents:
diff changeset
374
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clustalomega
parents:
diff changeset
375 CASE_SENSE_NAMES = YES
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clustalomega
parents:
diff changeset
376
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clustalomega
parents:
diff changeset
377 # If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen
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clustalomega
parents:
diff changeset
378 # will show members with their full class and namespace scopes in the
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clustalomega
parents:
diff changeset
379 # documentation. If set to YES the scope will be hidden.
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clustalomega
parents:
diff changeset
380
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clustalomega
parents:
diff changeset
381 HIDE_SCOPE_NAMES = NO
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clustalomega
parents:
diff changeset
382
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clustalomega
parents:
diff changeset
383 # If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen
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clustalomega
parents:
diff changeset
384 # will put a list of the files that are included by a file in the documentation
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clustalomega
parents:
diff changeset
385 # of that file.
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clustalomega
parents:
diff changeset
386
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clustalomega
parents:
diff changeset
387 SHOW_INCLUDE_FILES = YES
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clustalomega
parents:
diff changeset
388
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clustalomega
parents:
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389 # If the INLINE_INFO tag is set to YES (the default) then a tag [inline]
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clustalomega
parents:
diff changeset
390 # is inserted in the documentation for inline members.
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clustalomega
parents:
diff changeset
391
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clustalomega
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diff changeset
392 INLINE_INFO = YES
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clustalomega
parents:
diff changeset
393
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clustalomega
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394 # If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen
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clustalomega
parents:
diff changeset
395 # will sort the (detailed) documentation of file and class members
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clustalomega
parents:
diff changeset
396 # alphabetically by member name. If set to NO the members will appear in
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
397 # declaration order.
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clustalomega
parents:
diff changeset
398
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clustalomega
parents:
diff changeset
399 SORT_MEMBER_DOCS = YES
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clustalomega
parents:
diff changeset
400
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clustalomega
parents:
diff changeset
401 # If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the
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clustalomega
parents:
diff changeset
402 # brief documentation of file, namespace and class members alphabetically
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clustalomega
parents:
diff changeset
403 # by member name. If set to NO (the default) the members will appear in
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
404 # declaration order.
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clustalomega
parents:
diff changeset
405
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clustalomega
parents:
diff changeset
406 SORT_BRIEF_DOCS = NO
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clustalomega
parents:
diff changeset
407
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clustalomega
parents:
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408 # If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the
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clustalomega
parents:
diff changeset
409 # hierarchy of group names into alphabetical order. If set to NO (the default)
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clustalomega
parents:
diff changeset
410 # the group names will appear in their defined order.
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clustalomega
parents:
diff changeset
411
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clustalomega
parents:
diff changeset
412 SORT_GROUP_NAMES = NO
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clustalomega
parents:
diff changeset
413
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clustalomega
parents:
diff changeset
414 # If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be
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clustalomega
parents:
diff changeset
415 # sorted by fully-qualified names, including namespaces. If set to
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clustalomega
parents:
diff changeset
416 # NO (the default), the class list will be sorted only by class name,
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clustalomega
parents:
diff changeset
417 # not including the namespace part.
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clustalomega
parents:
diff changeset
418 # Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES.
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clustalomega
parents:
diff changeset
419 # Note: This option applies only to the class list, not to the
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clustalomega
parents:
diff changeset
420 # alphabetical list.
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clustalomega
parents:
diff changeset
421
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clustalomega
parents:
diff changeset
422 SORT_BY_SCOPE_NAME = NO
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clustalomega
parents:
diff changeset
423
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clustalomega
parents:
diff changeset
424 # The GENERATE_TODOLIST tag can be used to enable (YES) or
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
425 # disable (NO) the todo list. This list is created by putting \todo
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clustalomega
parents:
diff changeset
426 # commands in the documentation.
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clustalomega
parents:
diff changeset
427
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clustalomega
parents:
diff changeset
428 GENERATE_TODOLIST = YES
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clustalomega
parents:
diff changeset
429
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clustalomega
parents:
diff changeset
430 # The GENERATE_TESTLIST tag can be used to enable (YES) or
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clustalomega
parents:
diff changeset
431 # disable (NO) the test list. This list is created by putting \test
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clustalomega
parents:
diff changeset
432 # commands in the documentation.
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clustalomega
parents:
diff changeset
433
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clustalomega
parents:
diff changeset
434 GENERATE_TESTLIST = YES
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clustalomega
parents:
diff changeset
435
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clustalomega
parents:
diff changeset
436 # The GENERATE_BUGLIST tag can be used to enable (YES) or
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
437 # disable (NO) the bug list. This list is created by putting \bug
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clustalomega
parents:
diff changeset
438 # commands in the documentation.
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clustalomega
parents:
diff changeset
439
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clustalomega
parents:
diff changeset
440 GENERATE_BUGLIST = YES
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clustalomega
parents:
diff changeset
441
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clustalomega
parents:
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442 # The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or
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clustalomega
parents:
diff changeset
443 # disable (NO) the deprecated list. This list is created by putting
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clustalomega
parents:
diff changeset
444 # \deprecated commands in the documentation.
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clustalomega
parents:
diff changeset
445
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clustalomega
parents:
diff changeset
446 GENERATE_DEPRECATEDLIST= YES
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clustalomega
parents:
diff changeset
447
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clustalomega
parents:
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448 # The ENABLED_SECTIONS tag can be used to enable conditional
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clustalomega
parents:
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449 # documentation sections, marked by \if sectionname ... \endif.
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clustalomega
parents:
diff changeset
450
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clustalomega
parents:
diff changeset
451 ENABLED_SECTIONS =
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clustalomega
parents:
diff changeset
452
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clustalomega
parents:
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453 # The MAX_INITIALIZER_LINES tag determines the maximum number of lines
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clustalomega
parents:
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454 # the initial value of a variable or define consists of for it to appear in
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clustalomega
parents:
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455 # the documentation. If the initializer consists of more lines than specified
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clustalomega
parents:
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456 # here it will be hidden. Use a value of 0 to hide initializers completely.
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clustalomega
parents:
diff changeset
457 # The appearance of the initializer of individual variables and defines in the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
458 # documentation can be controlled using \showinitializer or \hideinitializer
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
459 # command in the documentation regardless of this setting.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
460
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
461 MAX_INITIALIZER_LINES = 30
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clustalomega
parents:
diff changeset
462
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
463 # Set the SHOW_USED_FILES tag to NO to disable the list of files generated
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
464 # at the bottom of the documentation of classes and structs. If set to YES the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
465 # list will mention the files that were used to generate the documentation.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
466
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
467 SHOW_USED_FILES = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
468
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
469 # If the sources in your project are distributed over multiple directories
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
470 # then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
471 # in the documentation. The default is NO.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
472
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
473 SHOW_DIRECTORIES = NO
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clustalomega
parents:
diff changeset
474
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
475 # Set the SHOW_FILES tag to NO to disable the generation of the Files page.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
476 # This will remove the Files entry from the Quick Index and from the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
477 # Folder Tree View (if specified). The default is YES.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
478
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
479 SHOW_FILES = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
480
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
481 # Set the SHOW_NAMESPACES tag to NO to disable the generation of the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
482 # Namespaces page.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
483 # This will remove the Namespaces entry from the Quick Index
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
484 # and from the Folder Tree View (if specified). The default is YES.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
485
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
486 SHOW_NAMESPACES = YES
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clustalomega
parents:
diff changeset
487
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
488 # The FILE_VERSION_FILTER tag can be used to specify a program or script that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
489 # doxygen should invoke to get the current version for each file (typically from
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
490 # the version control system). Doxygen will invoke the program by executing (via
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
491 # popen()) the command <command> <input-file>, where <command> is the value of
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
492 # the FILE_VERSION_FILTER tag, and <input-file> is the name of an input file
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
493 # provided by doxygen. Whatever the program writes to standard output
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
494 # is used as the file version. See the manual for examples.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
495
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
496 FILE_VERSION_FILTER =
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clustalomega
parents:
diff changeset
497
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
498 # The LAYOUT_FILE tag can be used to specify a layout file which will be parsed by
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
499 # doxygen. The layout file controls the global structure of the generated output files
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
500 # in an output format independent way. The create the layout file that represents
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
501 # doxygen's defaults, run doxygen with the -l option. You can optionally specify a
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
502 # file name after the option, if omitted DoxygenLayout.xml will be used as the name
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
503 # of the layout file.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
504
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
505 LAYOUT_FILE =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
506
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
507 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
508 # configuration options related to warning and progress messages
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
509 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
510
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
511 # The QUIET tag can be used to turn on/off the messages that are generated
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
512 # by doxygen. Possible values are YES and NO. If left blank NO is used.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
513
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
514 QUIET = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
515
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
516 # The WARNINGS tag can be used to turn on/off the warning messages that are
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
517 # generated by doxygen. Possible values are YES and NO. If left blank
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
518 # NO is used.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
519
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
520 WARNINGS = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
521
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
522 # If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
523 # for undocumented members. If EXTRACT_ALL is set to YES then this flag will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
524 # automatically be disabled.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
525
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
526 WARN_IF_UNDOCUMENTED = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
527
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
528 # If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
529 # potential errors in the documentation, such as not documenting some
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
530 # parameters in a documented function, or documenting parameters that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
531 # don't exist or using markup commands wrongly.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
532
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
533 WARN_IF_DOC_ERROR = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
534
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
535 # This WARN_NO_PARAMDOC option can be abled to get warnings for
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
536 # functions that are documented, but have no documentation for their parameters
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
537 # or return value. If set to NO (the default) doxygen will only warn about
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
538 # wrong or incomplete parameter documentation, but not about the absence of
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
539 # documentation.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
540
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
541 WARN_NO_PARAMDOC = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
542
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
543 # The WARN_FORMAT tag determines the format of the warning messages that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
544 # doxygen can produce. The string should contain the $file, $line, and $text
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
545 # tags, which will be replaced by the file and line number from which the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
546 # warning originated and the warning text. Optionally the format may contain
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
547 # $version, which will be replaced by the version of the file (if it could
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
548 # be obtained via FILE_VERSION_FILTER)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
549
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
550 WARN_FORMAT = "$file:$line: $text"
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
551
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
552 # The WARN_LOGFILE tag can be used to specify a file to which warning
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
553 # and error messages should be written. If left blank the output is written
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
554 # to stderr.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
555
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
556 WARN_LOGFILE =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
557
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
558 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
559 # configuration options related to the input files
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
560 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
561
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
562 # The INPUT tag can be used to specify the files and/or directories that contain
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
563 # documented source files. You may enter file names like "myfile.cpp" or
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
564 # directories like "/usr/src/myproject". Separate the files or directories
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
565 # with spaces.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
566
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
567 INPUT = ./src/clustal ./src/clustal-omega.h ./src/clustal-omega.c
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
568
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
569 # This tag can be used to specify the character encoding of the source files
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
570 # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
571 # also the default input encoding. Doxygen uses libiconv (or the iconv built
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
572 # into libc) for the transcoding. See http://www.gnu.org/software/libiconv for
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
573 # the list of possible encodings.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
574
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
575 INPUT_ENCODING = UTF-8
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clustalomega
parents:
diff changeset
576
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
577 # If the value of the INPUT tag contains directories, you can use the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
578 # FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
579 # and *.h) to filter out the source-files in the directories. If left
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
580 # blank the following patterns are tested:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
581 # *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
582 # *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py *.f90
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
583
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
584 FILE_PATTERNS = *.h *.c
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
585
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
586 # The RECURSIVE tag can be used to turn specify whether or not subdirectories
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
587 # should be searched for input files as well. Possible values are YES and NO.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
588 # If left blank NO is used.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
589
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
590 RECURSIVE = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
591
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
592 # The EXCLUDE tag can be used to specify files and/or directories that should
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
593 # excluded from the INPUT source files. This way you can easily exclude a
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
594 # subdirectory from a directory tree whose root is specified with the INPUT tag.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
595
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
596 EXCLUDE = ./src/config.h
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clustalomega
parents:
diff changeset
597
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
598 # The EXCLUDE_SYMLINKS tag can be used select whether or not files or
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
599 # directories that are symbolic links (a Unix filesystem feature) are excluded
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
600 # from the input.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
601
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
602 EXCLUDE_SYMLINKS = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
603
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
604 # If the value of the INPUT tag contains directories, you can use the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
605 # EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
606 # certain files from those directories. Note that the wildcards are matched
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
607 # against the file with absolute path, so to exclude all test directories
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
608 # for example use the pattern */test/*
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
609
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
610 EXCLUDE_PATTERNS =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
611
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
612 # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
613 # (namespaces, classes, functions, etc.) that should be excluded from the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
614 # output. The symbol name can be a fully qualified name, a word, or if the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
615 # wildcard * is used, a substring. Examples: ANamespace, AClass,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
616 # AClass::ANamespace, ANamespace::*Test
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
617
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
618 EXCLUDE_SYMBOLS =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
619
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
620 # The EXAMPLE_PATH tag can be used to specify one or more files or
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
621 # directories that contain example code fragments that are included (see
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
622 # the \include command).
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
623
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
624 EXAMPLE_PATH = ./src/
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
625
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
626 # If the value of the EXAMPLE_PATH tag contains directories, you can use the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
627 # EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
628 # and *.h) to filter out the source-files in the directories. If left
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
629 # blank all files are included.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
630
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
631 EXAMPLE_PATTERNS =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
632
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
633 # If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
634 # searched for input files to be used with the \include or \dontinclude
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
635 # commands irrespective of the value of the RECURSIVE tag.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
636 # Possible values are YES and NO. If left blank NO is used.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
637
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
638 EXAMPLE_RECURSIVE = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
639
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
640 # The IMAGE_PATH tag can be used to specify one or more files or
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
641 # directories that contain image that are included in the documentation (see
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
642 # the \image command).
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
643
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
644 IMAGE_PATH =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
645
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
646 # The INPUT_FILTER tag can be used to specify a program that doxygen should
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
647 # invoke to filter for each input file. Doxygen will invoke the filter program
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
648 # by executing (via popen()) the command <filter> <input-file>, where <filter>
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
649 # is the value of the INPUT_FILTER tag, and <input-file> is the name of an
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
650 # input file. Doxygen will then use the output that the filter program writes
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
651 # to standard output.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
652 # If FILTER_PATTERNS is specified, this tag will be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
653 # ignored.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
654
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
655 INPUT_FILTER =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
656
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
657 # The FILTER_PATTERNS tag can be used to specify filters on a per file pattern
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
658 # basis.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
659 # Doxygen will compare the file name with each pattern and apply the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
660 # filter if there is a match.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
661 # The filters are a list of the form:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
662 # pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
663 # info on how filters are used. If FILTER_PATTERNS is empty, INPUT_FILTER
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
664 # is applied to all files.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
665
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
666 FILTER_PATTERNS =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
667
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
668 # If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
669 # INPUT_FILTER) will be used to filter the input files when producing source
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
670 # files to browse (i.e. when SOURCE_BROWSER is set to YES).
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
671
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
672 FILTER_SOURCE_FILES = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
673
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
674 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
675 # configuration options related to source browsing
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
676 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
677
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
678 # If the SOURCE_BROWSER tag is set to YES then a list of source files will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
679 # be generated. Documented entities will be cross-referenced with these sources.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
680 # Note: To get rid of all source code in the generated output, make sure also
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
681 # VERBATIM_HEADERS is set to NO.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
682
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
683 SOURCE_BROWSER = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
684
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
685 # Setting the INLINE_SOURCES tag to YES will include the body
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
686 # of functions and classes directly in the documentation.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
687
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
688 INLINE_SOURCES = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
689
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
690 # Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
691 # doxygen to hide any special comment blocks from generated source code
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
692 # fragments. Normal C and C++ comments will always remain visible.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
693
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
694 STRIP_CODE_COMMENTS = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
695
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
696 # If the REFERENCED_BY_RELATION tag is set to YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
697 # then for each documented function all documented
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
698 # functions referencing it will be listed.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
699
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
700 REFERENCED_BY_RELATION = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
701
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
702 # If the REFERENCES_RELATION tag is set to YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
703 # then for each documented function all documented entities
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
704 # called/used by that function will be listed.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
705
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
706 REFERENCES_RELATION = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
707
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
708 # If the REFERENCES_LINK_SOURCE tag is set to YES (the default)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
709 # and SOURCE_BROWSER tag is set to YES, then the hyperlinks from
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
710 # functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
711 # link to the source code.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
712 # Otherwise they will link to the documentation.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
713
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
714 REFERENCES_LINK_SOURCE = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
715
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
716 # If the USE_HTAGS tag is set to YES then the references to source code
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
717 # will point to the HTML generated by the htags(1) tool instead of doxygen
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
718 # built-in source browser. The htags tool is part of GNU's global source
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
719 # tagging system (see http://www.gnu.org/software/global/global.html). You
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
720 # will need version 4.8.6 or higher.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
721
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
722 USE_HTAGS = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
723
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
724 # If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
725 # will generate a verbatim copy of the header file for each class for
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
726 # which an include is specified. Set to NO to disable this.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
727
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
728 VERBATIM_HEADERS = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
729
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
730 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
731 # configuration options related to the alphabetical class index
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
732 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
733
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
734 # If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
735 # of all compounds will be generated. Enable this if the project
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
736 # contains a lot of classes, structs, unions or interfaces.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
737
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
738 ALPHABETICAL_INDEX = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
739
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
740 # If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
741 # the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
742 # in which this list will be split (can be a number in the range [1..20])
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
743
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
744 COLS_IN_ALPHA_INDEX = 5
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
745
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
746 # In case all classes in a project start with a common prefix, all
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
747 # classes will be put under the same header in the alphabetical index.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
748 # The IGNORE_PREFIX tag can be used to specify one or more prefixes that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
749 # should be ignored while generating the index headers.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
750
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
751 IGNORE_PREFIX =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
752
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
753 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
754 # configuration options related to the HTML output
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
755 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
756
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
757 # If the GENERATE_HTML tag is set to YES (the default) Doxygen will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
758 # generate HTML output.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
759
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
760 GENERATE_HTML = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
761
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
762 # The HTML_OUTPUT tag is used to specify where the HTML docs will be put.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
763 # If a relative path is entered the value of OUTPUT_DIRECTORY will be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
764 # put in front of it. If left blank `html' will be used as the default path.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
765
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
766 HTML_OUTPUT = html
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
767
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
768 # The HTML_FILE_EXTENSION tag can be used to specify the file extension for
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
769 # each generated HTML page (for example: .htm,.php,.asp). If it is left blank
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
770 # doxygen will generate files with .html extension.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
771
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
772 HTML_FILE_EXTENSION = .html
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
773
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
774 # The HTML_HEADER tag can be used to specify a personal HTML header for
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
775 # each generated HTML page. If it is left blank doxygen will generate a
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
776 # standard header.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
777
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
778 HTML_HEADER =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
779
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
780 # The HTML_FOOTER tag can be used to specify a personal HTML footer for
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
781 # each generated HTML page. If it is left blank doxygen will generate a
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
782 # standard footer.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
783
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
784 HTML_FOOTER =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
785
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
786 # The HTML_STYLESHEET tag can be used to specify a user-defined cascading
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
787 # style sheet that is used by each HTML page. It can be used to
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
788 # fine-tune the look of the HTML output. If the tag is left blank doxygen
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
789 # will generate a default style sheet. Note that doxygen will try to copy
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
790 # the style sheet file to the HTML output directory, so don't put your own
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
791 # stylesheet in the HTML output directory as well, or it will be erased!
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
792
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
793 HTML_STYLESHEET =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
794
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
795 # If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
796 # files or namespaces will be aligned in HTML using tables. If set to
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
797 # NO a bullet list will be used.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
798
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
799 HTML_ALIGN_MEMBERS = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
800
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
801 # If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
802 # documentation will contain sections that can be hidden and shown after the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
803 # page has loaded. For this to work a browser that supports
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
804 # JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
805 # Netscape 6.0+, Internet explorer 5.0+, Konqueror, or Safari).
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
806
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
807 HTML_DYNAMIC_SECTIONS = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
808
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
809 # If the GENERATE_DOCSET tag is set to YES, additional index files
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
810 # will be generated that can be used as input for Apple's Xcode 3
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
811 # integrated development environment, introduced with OSX 10.5 (Leopard).
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
812 # To create a documentation set, doxygen will generate a Makefile in the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
813 # HTML output directory. Running make will produce the docset in that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
814 # directory and running "make install" will install the docset in
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
815 # ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
816 # it at startup.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
817 # See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html for more information.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
818
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
819 GENERATE_DOCSET = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
820
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
821 # When GENERATE_DOCSET tag is set to YES, this tag determines the name of the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
822 # feed. A documentation feed provides an umbrella under which multiple
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
823 # documentation sets from a single provider (such as a company or product suite)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
824 # can be grouped.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
825
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
826 DOCSET_FEEDNAME = "Doxygen generated docs"
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
827
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
828 # When GENERATE_DOCSET tag is set to YES, this tag specifies a string that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
829 # should uniquely identify the documentation set bundle. This should be a
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
830 # reverse domain-name style string, e.g. com.mycompany.MyDocSet. Doxygen
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
831 # will append .docset to the name.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
832
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
833 DOCSET_BUNDLE_ID = org.doxygen.Project
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
834
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
835 # If the GENERATE_HTMLHELP tag is set to YES, additional index files
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
836 # will be generated that can be used as input for tools like the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
837 # Microsoft HTML help workshop to generate a compiled HTML help file (.chm)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
838 # of the generated HTML documentation.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
839
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
840 GENERATE_HTMLHELP = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
841
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
842 # If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
843 # be used to specify the file name of the resulting .chm file. You
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
844 # can add a path in front of the file if the result should not be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
845 # written to the html output directory.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
846
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
847 CHM_FILE =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
848
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
849 # If the GENERATE_HTMLHELP tag is set to YES, the HHC_LOCATION tag can
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
850 # be used to specify the location (absolute path including file name) of
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
851 # the HTML help compiler (hhc.exe). If non-empty doxygen will try to run
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
852 # the HTML help compiler on the generated index.hhp.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
853
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
854 HHC_LOCATION =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
855
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
856 # If the GENERATE_HTMLHELP tag is set to YES, the GENERATE_CHI flag
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
857 # controls if a separate .chi index file is generated (YES) or that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
858 # it should be included in the master .chm file (NO).
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
859
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
860 GENERATE_CHI = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
861
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
862 # If the GENERATE_HTMLHELP tag is set to YES, the CHM_INDEX_ENCODING
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
863 # is used to encode HtmlHelp index (hhk), content (hhc) and project file
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
864 # content.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
865
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
866 CHM_INDEX_ENCODING =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
867
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
868 # If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
869 # controls whether a binary table of contents is generated (YES) or a
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
870 # normal table of contents (NO) in the .chm file.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
871
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
872 BINARY_TOC = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
873
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
874 # The TOC_EXPAND flag can be set to YES to add extra items for group members
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
875 # to the contents of the HTML help documentation and to the tree view.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
876
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
877 TOC_EXPAND = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
878
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
879 # If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and QHP_VIRTUAL_FOLDER
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
880 # are set, an additional index file will be generated that can be used as input for
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
881 # Qt's qhelpgenerator to generate a Qt Compressed Help (.qch) of the generated
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
882 # HTML documentation.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
883
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
884 GENERATE_QHP = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
885
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
886 # If the QHG_LOCATION tag is specified, the QCH_FILE tag can
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
887 # be used to specify the file name of the resulting .qch file.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
888 # The path specified is relative to the HTML output folder.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
889
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
890 QCH_FILE =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
891
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
892 # The QHP_NAMESPACE tag specifies the namespace to use when generating
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
893 # Qt Help Project output. For more information please see
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
894 # http://doc.trolltech.com/qthelpproject.html#namespace
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
895
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
896 QHP_NAMESPACE =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
897
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
898 # The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
899 # Qt Help Project output. For more information please see
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
900 # http://doc.trolltech.com/qthelpproject.html#virtual-folders
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
901
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
902 QHP_VIRTUAL_FOLDER = doc
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
903
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
904 # If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to add.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
905 # For more information please see
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
906 # http://doc.trolltech.com/qthelpproject.html#custom-filters
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
907
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
908 QHP_CUST_FILTER_NAME =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
909
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
910 # The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the custom filter to add.For more information please see
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
911 # <a href="http://doc.trolltech.com/qthelpproject.html#custom-filters">Qt Help Project / Custom Filters</a>.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
912
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
913 QHP_CUST_FILTER_ATTRS =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
914
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
915 # The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this project's
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
916 # filter section matches.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
917 # <a href="http://doc.trolltech.com/qthelpproject.html#filter-attributes">Qt Help Project / Filter Attributes</a>.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
918
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
919 QHP_SECT_FILTER_ATTRS =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
920
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
921 # If the GENERATE_QHP tag is set to YES, the QHG_LOCATION tag can
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
922 # be used to specify the location of Qt's qhelpgenerator.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
923 # If non-empty doxygen will try to run qhelpgenerator on the generated
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
924 # .qhp file.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
925
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
926 QHG_LOCATION =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
927
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
928 # The DISABLE_INDEX tag can be used to turn on/off the condensed index at
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
929 # top of each HTML page. The value NO (the default) enables the index and
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
930 # the value YES disables it.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
931
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
932 DISABLE_INDEX = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
933
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
934 # This tag can be used to set the number of enum values (range [1..20])
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
935 # that doxygen will group on one line in the generated HTML documentation.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
936
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
937 ENUM_VALUES_PER_LINE = 4
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
938
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
939 # The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
940 # structure should be generated to display hierarchical information.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
941 # If the tag value is set to FRAME, a side panel will be generated
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
942 # containing a tree-like index structure (just like the one that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
943 # is generated for HTML Help). For this to work a browser that supports
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
944 # JavaScript, DHTML, CSS and frames is required (for instance Mozilla 1.0+,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
945 # Netscape 6.0+, Internet explorer 5.0+, or Konqueror). Windows users are
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
946 # probably better off using the HTML help feature. Other possible values
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
947 # for this tag are: HIERARCHIES, which will generate the Groups, Directories,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
948 # and Class Hierarchy pages using a tree view instead of an ordered list;
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
949 # ALL, which combines the behavior of FRAME and HIERARCHIES; and NONE, which
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
950 # disables this behavior completely. For backwards compatibility with previous
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
951 # releases of Doxygen, the values YES and NO are equivalent to FRAME and NONE
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
952 # respectively.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
953
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
954 GENERATE_TREEVIEW = NONE
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
955
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
956 # If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
957 # used to set the initial width (in pixels) of the frame in which the tree
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
958 # is shown.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
959
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
960 TREEVIEW_WIDTH = 250
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
961
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
962 # Use this tag to change the font size of Latex formulas included
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
963 # as images in the HTML documentation. The default is 10. Note that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
964 # when you change the font size after a successful doxygen run you need
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
965 # to manually remove any form_*.png images from the HTML output directory
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
966 # to force them to be regenerated.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
967
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
968 FORMULA_FONTSIZE = 10
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
969
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
970 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
971 # configuration options related to the LaTeX output
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
972 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
973
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
974 # If the GENERATE_LATEX tag is set to YES (the default) Doxygen will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
975 # generate Latex output.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
976
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
977 GENERATE_LATEX = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
978
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
979 # The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
980 # If a relative path is entered the value of OUTPUT_DIRECTORY will be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
981 # put in front of it. If left blank `latex' will be used as the default path.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
982
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
983 LATEX_OUTPUT = latex
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
984
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
985 # The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
986 # invoked. If left blank `latex' will be used as the default command name.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
987
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
988 LATEX_CMD_NAME = latex
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
989
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
990 # The MAKEINDEX_CMD_NAME tag can be used to specify the command name to
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
991 # generate index for LaTeX. If left blank `makeindex' will be used as the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
992 # default command name.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
993
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
994 MAKEINDEX_CMD_NAME = makeindex
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
995
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
996 # If the COMPACT_LATEX tag is set to YES Doxygen generates more compact
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
997 # LaTeX documents. This may be useful for small projects and may help to
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
998 # save some trees in general.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
999
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1000 COMPACT_LATEX = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1001
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1002 # The PAPER_TYPE tag can be used to set the paper type that is used
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1003 # by the printer. Possible values are: a4, a4wide, letter, legal and
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1004 # executive. If left blank a4wide will be used.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1005
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1006 PAPER_TYPE = a4wide
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1007
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1008 # The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1009 # packages that should be included in the LaTeX output.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1010
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1011 EXTRA_PACKAGES =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1012
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1013 # The LATEX_HEADER tag can be used to specify a personal LaTeX header for
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1014 # the generated latex document. The header should contain everything until
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1015 # the first chapter. If it is left blank doxygen will generate a
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1016 # standard header. Notice: only use this tag if you know what you are doing!
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1017
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1018 LATEX_HEADER =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1019
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1020 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1021 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1022 # contain links (just like the HTML output) instead of page references
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1023 # This makes the output suitable for online browsing using a pdf viewer.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1024
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1025 PDF_HYPERLINKS = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1026
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1027 # If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1028 # plain latex in the generated Makefile. Set this option to YES to get a
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1029 # higher quality PDF documentation.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1030
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1031 USE_PDFLATEX = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1032
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1033 # If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1034 # command to the generated LaTeX files. This will instruct LaTeX to keep
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1035 # running if errors occur, instead of asking the user for help.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1036 # This option is also used when generating formulas in HTML.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1037
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1038 LATEX_BATCHMODE = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1039
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1040 # If LATEX_HIDE_INDICES is set to YES then doxygen will not
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1041 # include the index chapters (such as File Index, Compound Index, etc.)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1042 # in the output.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1043
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1044 LATEX_HIDE_INDICES = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1045
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1046 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1047 # configuration options related to the RTF output
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1048 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1049
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1050 # If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1051 # The RTF output is optimized for Word 97 and may not look very pretty with
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1052 # other RTF readers or editors.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1053
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1054 GENERATE_RTF = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1055
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1056 # The RTF_OUTPUT tag is used to specify where the RTF docs will be put.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1057 # If a relative path is entered the value of OUTPUT_DIRECTORY will be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1058 # put in front of it. If left blank `rtf' will be used as the default path.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1059
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1060 RTF_OUTPUT = rtf
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1061
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1062 # If the COMPACT_RTF tag is set to YES Doxygen generates more compact
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1063 # RTF documents. This may be useful for small projects and may help to
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1064 # save some trees in general.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1065
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1066 COMPACT_RTF = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1067
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1068 # If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1069 # will contain hyperlink fields. The RTF file will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1070 # contain links (just like the HTML output) instead of page references.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1071 # This makes the output suitable for online browsing using WORD or other
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1072 # programs which support those fields.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1073 # Note: wordpad (write) and others do not support links.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1074
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1075 RTF_HYPERLINKS = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1076
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1077 # Load stylesheet definitions from file. Syntax is similar to doxygen's
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1078 # config file, i.e. a series of assignments. You only have to provide
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1079 # replacements, missing definitions are set to their default value.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1080
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1081 RTF_STYLESHEET_FILE =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1082
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1083 # Set optional variables used in the generation of an rtf document.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1084 # Syntax is similar to doxygen's config file.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1085
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1086 RTF_EXTENSIONS_FILE =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1087
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1088 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1089 # configuration options related to the man page output
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1090 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1091
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1092 # If the GENERATE_MAN tag is set to YES (the default) Doxygen will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1093 # generate man pages
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1094
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1095 GENERATE_MAN = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1096
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1097 # The MAN_OUTPUT tag is used to specify where the man pages will be put.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1098 # If a relative path is entered the value of OUTPUT_DIRECTORY will be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1099 # put in front of it. If left blank `man' will be used as the default path.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1100
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1101 MAN_OUTPUT = man
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1102
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1103 # The MAN_EXTENSION tag determines the extension that is added to
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1104 # the generated man pages (default is the subroutine's section .3)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1105
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1106 MAN_EXTENSION = .3
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1107
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1108 # If the MAN_LINKS tag is set to YES and Doxygen generates man output,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1109 # then it will generate one additional man file for each entity
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1110 # documented in the real man page(s). These additional files
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1111 # only source the real man page, but without them the man command
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1112 # would be unable to find the correct page. The default is NO.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1113
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1114 MAN_LINKS = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1115
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1116 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1117 # configuration options related to the XML output
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1118 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1119
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1120 # If the GENERATE_XML tag is set to YES Doxygen will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1121 # generate an XML file that captures the structure of
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1122 # the code including all documentation.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1123
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1124 GENERATE_XML = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1125
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1126 # The XML_OUTPUT tag is used to specify where the XML pages will be put.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1127 # If a relative path is entered the value of OUTPUT_DIRECTORY will be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1128 # put in front of it. If left blank `xml' will be used as the default path.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1129
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1130 XML_OUTPUT = xml
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1131
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1132 # The XML_SCHEMA tag can be used to specify an XML schema,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1133 # which can be used by a validating XML parser to check the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1134 # syntax of the XML files.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1135
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1136 XML_SCHEMA =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1137
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1138 # The XML_DTD tag can be used to specify an XML DTD,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1139 # which can be used by a validating XML parser to check the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1140 # syntax of the XML files.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1141
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1142 XML_DTD =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1143
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1144 # If the XML_PROGRAMLISTING tag is set to YES Doxygen will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1145 # dump the program listings (including syntax highlighting
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1146 # and cross-referencing information) to the XML output. Note that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1147 # enabling this will significantly increase the size of the XML output.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1148
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1149 XML_PROGRAMLISTING = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1150
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1151 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1152 # configuration options for the AutoGen Definitions output
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1153 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1154
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1155 # If the GENERATE_AUTOGEN_DEF tag is set to YES Doxygen will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1156 # generate an AutoGen Definitions (see autogen.sf.net) file
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1157 # that captures the structure of the code including all
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1158 # documentation. Note that this feature is still experimental
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1159 # and incomplete at the moment.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1160
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1161 GENERATE_AUTOGEN_DEF = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1162
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1163 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1164 # configuration options related to the Perl module output
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1165 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1166
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1167 # If the GENERATE_PERLMOD tag is set to YES Doxygen will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1168 # generate a Perl module file that captures the structure of
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1169 # the code including all documentation. Note that this
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1170 # feature is still experimental and incomplete at the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1171 # moment.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1172
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1173 GENERATE_PERLMOD = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1174
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1175 # If the PERLMOD_LATEX tag is set to YES Doxygen will generate
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1176 # the necessary Makefile rules, Perl scripts and LaTeX code to be able
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1177 # to generate PDF and DVI output from the Perl module output.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1178
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1179 PERLMOD_LATEX = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1180
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1181 # If the PERLMOD_PRETTY tag is set to YES the Perl module output will be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1182 # nicely formatted so it can be parsed by a human reader.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1183 # This is useful
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1184 # if you want to understand what is going on.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1185 # On the other hand, if this
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1186 # tag is set to NO the size of the Perl module output will be much smaller
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1187 # and Perl will parse it just the same.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1188
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1189 PERLMOD_PRETTY = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1190
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1191 # The names of the make variables in the generated doxyrules.make file
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1192 # are prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1193 # This is useful so different doxyrules.make files included by the same
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1194 # Makefile don't overwrite each other's variables.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1195
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1196 PERLMOD_MAKEVAR_PREFIX =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1197
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1198 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1199 # Configuration options related to the preprocessor
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1200 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1201
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1202 # If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1203 # evaluate all C-preprocessor directives found in the sources and include
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1204 # files.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1205
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1206 ENABLE_PREPROCESSING = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1207
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1208 # If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1209 # names in the source code. If set to NO (the default) only conditional
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1210 # compilation will be performed. Macro expansion can be done in a controlled
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1211 # way by setting EXPAND_ONLY_PREDEF to YES.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1212
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1213 MACRO_EXPANSION = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1214
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1215 # If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1216 # then the macro expansion is limited to the macros specified with the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1217 # PREDEFINED and EXPAND_AS_DEFINED tags.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1218
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1219 EXPAND_ONLY_PREDEF = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1220
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1221 # If the SEARCH_INCLUDES tag is set to YES (the default) the includes files
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1222 # in the INCLUDE_PATH (see below) will be search if a #include is found.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1223
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1224 SEARCH_INCLUDES = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1225
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1226 # The INCLUDE_PATH tag can be used to specify one or more directories that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1227 # contain include files that are not input files but should be processed by
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1228 # the preprocessor.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1229
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1230 INCLUDE_PATH =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1231
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1232 # You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1233 # patterns (like *.h and *.hpp) to filter out the header-files in the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1234 # directories. If left blank, the patterns specified with FILE_PATTERNS will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1235 # be used.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1236
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1237 INCLUDE_FILE_PATTERNS =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1238
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1239 # The PREDEFINED tag can be used to specify one or more macro names that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1240 # are defined before the preprocessor is started (similar to the -D option of
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1241 # gcc). The argument of the tag is a list of macros of the form: name
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1242 # or name=definition (no spaces). If the definition and the = are
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1243 # omitted =1 is assumed. To prevent a macro definition from being
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1244 # undefined via #undef or recursively expanded use the := operator
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1245 # instead of the = operator.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1246
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1247 PREDEFINED =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1248
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1249 # If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1250 # this tag can be used to specify a list of macro names that should be expanded.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1251 # The macro definition that is found in the sources will be used.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1252 # Use the PREDEFINED tag if you want to use a different macro definition.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1253
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1254 EXPAND_AS_DEFINED =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1255
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1256 # If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1257 # doxygen's preprocessor will remove all function-like macros that are alone
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1258 # on a line, have an all uppercase name, and do not end with a semicolon. Such
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1259 # function macros are typically used for boiler-plate code, and will confuse
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1260 # the parser if not removed.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1261
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1262 SKIP_FUNCTION_MACROS = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1263
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1264 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1265 # Configuration::additions related to external references
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1266 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1267
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1268 # The TAGFILES option can be used to specify one or more tagfiles.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1269 # Optionally an initial location of the external documentation
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1270 # can be added for each tagfile. The format of a tag file without
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1271 # this location is as follows:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1272 #
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1273 # TAGFILES = file1 file2 ...
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1274 # Adding location for the tag files is done as follows:
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1275 #
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1276 # TAGFILES = file1=loc1 "file2 = loc2" ...
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1277 # where "loc1" and "loc2" can be relative or absolute paths or
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1278 # URLs. If a location is present for each tag, the installdox tool
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1279 # does not have to be run to correct the links.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1280 # Note that each tag file must have a unique name
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1281 # (where the name does NOT include the path)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1282 # If a tag file is not located in the directory in which doxygen
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1283 # is run, you must also specify the path to the tagfile here.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1284
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1285 TAGFILES =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1286
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1287 # When a file name is specified after GENERATE_TAGFILE, doxygen will create
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1288 # a tag file that is based on the input files it reads.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1289
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1290 GENERATE_TAGFILE =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1291
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1292 # If the ALLEXTERNALS tag is set to YES all external classes will be listed
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1293 # in the class index. If set to NO only the inherited external classes
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1294 # will be listed.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1295
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1296 ALLEXTERNALS = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1297
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1298 # If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1299 # in the modules index. If set to NO, only the current project's groups will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1300 # be listed.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1301
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1302 EXTERNAL_GROUPS = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1303
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1304 # The PERL_PATH should be the absolute path and name of the perl script
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1305 # interpreter (i.e. the result of `which perl').
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1306
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1307 PERL_PATH = /usr/bin/perl
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1308
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1309 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1310 # Configuration options related to the dot tool
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1311 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1312
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1313 # If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1314 # generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1315 # or super classes. Setting the tag to NO turns the diagrams off. Note that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1316 # this option is superseded by the HAVE_DOT option below. This is only a
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1317 # fallback. It is recommended to install and use dot, since it yields more
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1318 # powerful graphs.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1319
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1320 CLASS_DIAGRAMS = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1321
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1322 # You can define message sequence charts within doxygen comments using the \msc
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1323 # command. Doxygen will then run the mscgen tool (see
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1324 # http://www.mcternan.me.uk/mscgen/) to produce the chart and insert it in the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1325 # documentation. The MSCGEN_PATH tag allows you to specify the directory where
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1326 # the mscgen tool resides. If left empty the tool is assumed to be found in the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1327 # default search path.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1328
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1329 MSCGEN_PATH =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1330
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1331 # If set to YES, the inheritance and collaboration graphs will hide
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1332 # inheritance and usage relations if the target is undocumented
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1333 # or is not a class.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1334
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1335 HIDE_UNDOC_RELATIONS = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1336
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1337 # If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1338 # available from the path. This tool is part of Graphviz, a graph visualization
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1339 # toolkit from AT&T and Lucent Bell Labs. The other options in this section
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1340 # have no effect if this option is set to NO (the default)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1341
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1342 HAVE_DOT = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1343
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1344 # By default doxygen will write a font called FreeSans.ttf to the output
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1345 # directory and reference it in all dot files that doxygen generates. This
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1346 # font does not include all possible unicode characters however, so when you need
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1347 # these (or just want a differently looking font) you can specify the font name
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1348 # using DOT_FONTNAME. You need need to make sure dot is able to find the font,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1349 # which can be done by putting it in a standard location or by setting the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1350 # DOTFONTPATH environment variable or by setting DOT_FONTPATH to the directory
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1351 # containing the font.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1352
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1353 DOT_FONTNAME = FreeSans
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1354
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1355 # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1356 # The default size is 10pt.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1357
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1358 DOT_FONTSIZE = 10
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1359
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1360 # By default doxygen will tell dot to use the output directory to look for the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1361 # FreeSans.ttf font (which doxygen will put there itself). If you specify a
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1362 # different font using DOT_FONTNAME you can set the path where dot
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1363 # can find it using this tag.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1364
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1365 DOT_FONTPATH =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1366
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1367 # If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1368 # will generate a graph for each documented class showing the direct and
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1369 # indirect inheritance relations. Setting this tag to YES will force the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1370 # the CLASS_DIAGRAMS tag to NO.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1371
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1372 CLASS_GRAPH = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1373
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1374 # If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1375 # will generate a graph for each documented class showing the direct and
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1376 # indirect implementation dependencies (inheritance, containment, and
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1377 # class references variables) of the class with other documented classes.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1378
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1379 COLLABORATION_GRAPH = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1380
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1381 # If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1382 # will generate a graph for groups, showing the direct groups dependencies
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1383
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1384 GROUP_GRAPHS = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1385
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1386 # If the UML_LOOK tag is set to YES doxygen will generate inheritance and
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1387 # collaboration diagrams in a style similar to the OMG's Unified Modeling
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1388 # Language.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1389
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1390 UML_LOOK = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1391
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1392 # If set to YES, the inheritance and collaboration graphs will show the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1393 # relations between templates and their instances.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1394
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1395 TEMPLATE_RELATIONS = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1396
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1397 # If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1398 # tags are set to YES then doxygen will generate a graph for each documented
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1399 # file showing the direct and indirect include dependencies of the file with
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1400 # other documented files.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1401
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1402 INCLUDE_GRAPH = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1403
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1404 # If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1405 # HAVE_DOT tags are set to YES then doxygen will generate a graph for each
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1406 # documented header file showing the documented files that directly or
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1407 # indirectly include this file.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1408
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1409 INCLUDED_BY_GRAPH = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1410
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1411 # If the CALL_GRAPH and HAVE_DOT options are set to YES then
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1412 # doxygen will generate a call dependency graph for every global function
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1413 # or class method. Note that enabling this option will significantly increase
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1414 # the time of a run. So in most cases it will be better to enable call graphs
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1415 # for selected functions only using the \callgraph command.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1416
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1417 CALL_GRAPH = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1418
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1419 # If the CALLER_GRAPH and HAVE_DOT tags are set to YES then
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1420 # doxygen will generate a caller dependency graph for every global function
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1421 # or class method. Note that enabling this option will significantly increase
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1422 # the time of a run. So in most cases it will be better to enable caller
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1423 # graphs for selected functions only using the \callergraph command.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1424
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1425 CALLER_GRAPH = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1426
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1427 # If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1428 # will graphical hierarchy of all classes instead of a textual one.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1429
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1430 GRAPHICAL_HIERARCHY = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1431
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1432 # If the DIRECTORY_GRAPH, SHOW_DIRECTORIES and HAVE_DOT tags are set to YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1433 # then doxygen will show the dependencies a directory has on other directories
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1434 # in a graphical way. The dependency relations are determined by the #include
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1435 # relations between the files in the directories.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1436
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1437 DIRECTORY_GRAPH = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1438
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1439 # The DOT_IMAGE_FORMAT tag can be used to set the image format of the images
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1440 # generated by dot. Possible values are png, jpg, or gif
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1441 # If left blank png will be used.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1442
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1443 DOT_IMAGE_FORMAT = png
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1444
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1445 # The tag DOT_PATH can be used to specify the path where the dot tool can be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1446 # found. If left blank, it is assumed the dot tool can be found in the path.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1447
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1448 DOT_PATH =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1449
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1450 # The DOTFILE_DIRS tag can be used to specify one or more directories that
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1451 # contain dot files that are included in the documentation (see the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1452 # \dotfile command).
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1453
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1454 DOTFILE_DIRS =
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1455
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1456 # The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1457 # nodes that will be shown in the graph. If the number of nodes in a graph
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1458 # becomes larger than this value, doxygen will truncate the graph, which is
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1459 # visualized by representing a node as a red box. Note that doxygen if the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1460 # number of direct children of the root node in a graph is already larger than
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1461 # DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1462 # that the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1463
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1464 DOT_GRAPH_MAX_NODES = 50
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1465
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1466 # The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1467 # graphs generated by dot. A depth value of 3 means that only nodes reachable
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1468 # from the root by following a path via at most 3 edges will be shown. Nodes
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1469 # that lay further from the root node will be omitted. Note that setting this
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1470 # option to 1 or 2 may greatly reduce the computation time needed for large
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1471 # code bases. Also note that the size of a graph can be further restricted by
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1472 # DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1473
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1474 MAX_DOT_GRAPH_DEPTH = 0
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1475
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1476 # Set the DOT_TRANSPARENT tag to YES to generate images with a transparent
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1477 # background. This is disabled by default, because dot on Windows does not
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1478 # seem to support this out of the box. Warning: Depending on the platform used,
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1479 # enabling this option may lead to badly anti-aliased labels on the edges of
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1480 # a graph (i.e. they become hard to read).
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1481
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1482 DOT_TRANSPARENT = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1483
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1484 # Set the DOT_MULTI_TARGETS tag to YES allow dot to generate multiple output
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1485 # files in one run (i.e. multiple -o and -T options on the command line). This
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1486 # makes dot run faster, but since only newer versions of dot (>1.8.10)
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1487 # support this, this feature is disabled by default.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1488
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1489 DOT_MULTI_TARGETS = NO
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1490
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1491 # If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1492 # generate a legend page explaining the meaning of the various boxes and
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1493 # arrows in the dot generated graphs.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1494
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1495 GENERATE_LEGEND = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1496
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1497 # If the DOT_CLEANUP tag is set to YES (the default) Doxygen will
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1498 # remove the intermediate dot files that are used to generate
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1499 # the various graphs.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1500
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1501 DOT_CLEANUP = YES
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1502
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1503 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1504 # Options related to the search engine
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1505 #---------------------------------------------------------------------------
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1506
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1507 # The SEARCHENGINE tag specifies whether or not a search engine should be
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1508 # used. If set to NO the values of all tags below this one will be ignored.
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1509
ff1768533a07 Migrated tool version 0.2 from old tool shed archive to new tool shed repository
clustalomega
parents:
diff changeset
1510 SEARCHENGINE = NO