Mercurial > repos > cmonjeau > lordec
changeset 3:e978c66bb55f draft
Uploaded
| author | abretaud |
|---|---|
| date | Wed, 31 Aug 2016 11:22:15 -0400 |
| parents | 2e8e1bf4febf |
| children | f0b144292846 |
| files | lordec_correct.xml |
| diffstat | 1 files changed, 9 insertions(+), 7 deletions(-) [+] |
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--- a/lordec_correct.xml Mon Sep 28 13:19:01 2015 +0000 +++ b/lordec_correct.xml Wed Aug 31 11:22:15 2016 -0400 @@ -1,9 +1,9 @@ -<tool id="lordeccorrect" name="lordeccorrect" version="0.5.3"> +<tool id="lordeccorrect" name="lordeccorrect" version="0.6"> <description>is an efficient tool for correcting sequencing errors in PacBio reads</description> <requirements> - <requirement type="package" version="0.5.3">lordec</requirement> + <requirement type="package" version="0.6">lordec</requirement> </requirements> - <command> + <command><![CDATA[ lordec-correct -2 $short_reads -i $long_reads @@ -16,8 +16,9 @@ -b $advanced_options.branch -e $advanced_options.errorrate -T $advanced_options.threads -#end if -2>1 +#end if +2>&1 +]]> </command> <inputs> @@ -63,7 +64,7 @@ **Integrated by** -Yvan Le Bras and Cyril Monjeaud +Yvan Le Bras and Cyril Monjeaud GenOuest Bio-informatics Core Facility @@ -77,6 +78,7 @@ </help> <citations> + <citation type="doi">10.1186/s13742-015-0105-2</citation> <citation type="doi">10.1093/bioinformatics/btu538</citation> <citation type="bibtex">@INPROCEEDINGS{JOBIM2013, author = {Le Bras, Y. and ROULT, A. and Monjeaud, C. and Bahin, M. and Quenez, O. and Heriveau, C. and Bretaudeau, A. and Sallou, O. and Collin, O.}, @@ -86,5 +88,5 @@ url = {https://www.e-biogenouest.org/resources/128}, pages = {97-106} }</citation> -</citations> +</citations> </tool>