annotate tool_dependencies.xml @ 0:741836b9e2c5 draft default tip

Imported from capsule None

<?xml version="1.0"?>
<tool_dependency>
    <package name="commet" version="24.7.14">
        <install version="1.0">
        <actions>
                <action type="download_by_url">http://github.com/pierrepeterlongo/commet/archive/master.zip</action>
                <action type="shell_command">make</action>

	<!-- move directories into $INSTALL_DIR -->
        <action type="move_directory_files">
        <source_directory>bin</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
	</action>

	<!-- move files into $INSTALL_DIR -->
	<action type="move_file">
                     <source>dendro.R</source>
                     <destination>$INSTALL_DIR/Rscript</destination>
        </action>

	<action type="move_file">
                     <source>heatmap.r</source>
                     <destination>$INSTALL_DIR/Rscript</destination>
         </action>
         <action type="move_file">
                     <source>Commet.py</source>
                     <destination>$INSTALL_DIR</destination>
         </action>
         <action type="shell_command">chmod +x $INSTALL_DIR/Commet.py</action>


	<!-- create env.sh -->
        <action type="set_environment">
             <!--environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/</environment_variable-->
             <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/</environment_variable>
             <environment_variable name="BINARIES" action="set_to">$INSTALL_DIR/bin/</environment_variable>
             <environment_variable name="RSCRIPTS" action="set_to">$INSTALL_DIR/Rscript/</environment_variable>
         </action>                
        </actions>
        </install>
        <readme>
            This package installs commet from the sources available in the commet Github project
        </readme>
    </package>
</tool_dependency>