comparison bprom_gff3_converter.xml @ 0:14e64dda68c8 draft default tip

planemo upload commit 852ac96ca53a2ffa0947e6df5e24671866b642f5

0:14e64dda68c8

<tool id="edu.tamu.cpt.external.BPROM-gff3" name="Convert BPROM results to GFF" version="22.1.0.0">
  <description/>
  <requirements>
    <requirement type="package" version="3.8">python</requirement>
    <requirement type="package" version="1.0.5">pandas</requirement>
  </requirements>
  <command detect_errors="aggressive"><![CDATA[
python3.8 '$__tool_directory__/bprom_gff3_converter.py'
-f '$txtIn'
> '$gffOut']]></command>
  <inputs>
    <param name="txtIn" type="data" label="BPROM Results" format="txt"/>
  </inputs>
  <outputs>
    <data format="gff3" name="gffOut" label="BPROM to GFF Results"/>
  </outputs>
  <tests/>
  <help><![CDATA[
**What it does**

Converts BPROM text output to GFF3 format
      ]]></help>
  <citations>
    <citation type="bibtex">
			@unpublished{galaxyTools,
				author = {J. Chamblee},
				title = {CPT Galaxy Tools},
				year = {2022},
				note = {https://github.com/tamu-cpt/galaxy-tools/}
			}
                        </citation>
  </citations>
</tool>