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date Sun, 23 Jul 2023 01:47:35 +0000
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1 <tool id="edu.tamu.cpt.external.BPROM-gff3" name="Convert BPROM results to GFF" version="22.1.0.0">
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2 <description/>
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3 <requirements>
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4 <requirement type="package" version="3.8">python</requirement>
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5 <requirement type="package" version="1.0.5">pandas</requirement>
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6 </requirements>
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7 <command detect_errors="aggressive"><![CDATA[
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8 python3.8 '$__tool_directory__/bprom_gff3_converter.py'
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9 -f '$txtIn'
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10 > '$gffOut']]></command>
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11 <inputs>
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12 <param name="txtIn" type="data" label="BPROM Results" format="txt"/>
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13 </inputs>
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14 <outputs>
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15 <data format="gff3" name="gffOut" label="BPROM to GFF Results"/>
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16 </outputs>
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17 <tests/>
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18 <help><![CDATA[
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19 **What it does**
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20
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21 Converts BPROM text output to GFF3 format
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22 ]]></help>
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23 <citations>
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24 <citation type="bibtex">
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25 @unpublished{galaxyTools,
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26 author = {J. Chamblee},
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27 title = {CPT Galaxy Tools},
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28 year = {2022},
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29 note = {https://github.com/tamu-cpt/galaxy-tools/}
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30 }
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31 </citation>
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32 </citations>
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33 </tool>