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annotate cpt_trnascanse_to_gff/tRNAscan_to_gff_SE_format.xml @ 1:7bf46fd8d62e draft

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author cpt
date Fri, 20 May 2022 07:16:45 +0000
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1 <?xml version="1.0"?>
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2 <tool id="tRNA-SE_scan_to_gff" name="Convert tRNAscan-SE table to gff format" version="20.0.0">
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3 <description></description>
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4 <macros>
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5 <import>macros.xml</import>
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6 <import>cpt-macros.xml</import>
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7 </macros>
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8 <expand macro="requirements"/>
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9 <command detect_errors="aggressive"><![CDATA[
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10 python $__tool_directory__/tRNAscan_to_gff_SE_format.py
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11 < $trnascan
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12 > $output
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13 ]]></command>
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14 <inputs>
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15 <param format="tabular" type="data" name="trnascan" label="tRNAscan table" />
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16 </inputs>
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17 <outputs>
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18 <data format="gff3" name="output">
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19 </data>
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20 </outputs>
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21 <tests>
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22 <test>
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23 <param name="trnascan" value="ConvTrnaSe_In.tabular" />
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24 <output name="output" file="ConvTrnaSe_Out.gff3" />
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25 </test>
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26 </tests>
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27 <help><![CDATA[
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28 What it does
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29 ============
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30
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31 Converts tRNAscan-SE table to gff format
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32
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33 ]]></help>
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34 <expand macro="citations" />
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35 </tool>