comparison Disruptin_hydrophobicity_helicity_table_package.xml @ 1:a99be535e99d draft

planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c

1:a99be535e99d

<tool id="edu.tamu.cpt2.phage.disruptin_table" name="Disruptin Table Output" version="1.0">
  <description>makes table of disruptin candidates</description>
  <macros>
    <import>macros.xml</import>
    <import>cpt-macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[
python '$__tool_directory__/Disruptin_hydrophobicity_helicity_table_package.py'
'$garnier_file'
'$fasta_file'



>$output]]></command>
  <inputs>
    <param label="Garnier csv file" name="garnier_file" type="data" format="tabular"/>
    <param label="Candidate fasta file" name="fasta_file" type="data" format="fasta"/>
  </inputs>
  <outputs>
    <data format="tabular" name="output"/>
  </outputs>
  <help><![CDATA[
**What it does**
This program takes the parsed output from the garnier tool and the fasta file with disruptin candidate sequences
and compiles information on each of the sequences into a table format. The table includes the sequence and the position for each residue
as well as the charge, hydrophobicity (based on the Kyte Doolittle scale), and secondary structure prediction from
the garnier tool.

        ]]></help>
  <expand macro="citations"/>
</tool>