diff Disruptin_hydrophobicity_helicity_table_package.xml @ 1:a99be535e99d draft

planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c

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+++ b/Disruptin_hydrophobicity_helicity_table_package.xml	Mon Jun 05 02:41:05 2023 +0000
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+<tool id="edu.tamu.cpt2.phage.disruptin_table" name="Disruptin Table Output" version="1.0">
+  <description>makes table of disruptin candidates</description>
+  <macros>
+    <import>macros.xml</import>
+    <import>cpt-macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <command detect_errors="aggressive"><![CDATA[
+python '$__tool_directory__/Disruptin_hydrophobicity_helicity_table_package.py'
+'$garnier_file'
+'$fasta_file'
+
+
+
+>$output]]></command>
+  <inputs>
+    <param label="Garnier csv file" name="garnier_file" type="data" format="tabular"/>
+    <param label="Candidate fasta file" name="fasta_file" type="data" format="fasta"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="output"/>
+  </outputs>
+  <help><![CDATA[
+**What it does**
+This program takes the parsed output from the garnier tool and the fasta file with disruptin candidate sequences
+and compiles information on each of the sequences into a table format. The table includes the sequence and the position for each residue
+as well as the charge, hydrophobicity (based on the Kyte Doolittle scale), and secondary structure prediction from
+the garnier tool.
+
+        ]]></help>
+  <expand macro="citations"/>
+</tool>