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annotate gff3_splitgff.xml @ 4:4b60e0b6a150 draft

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date Fri, 05 Jan 2024 05:52:42 +0000
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1 <tool id="edu.tamu.cpt2.gff3.splitGff" name="Split GFF3+Fasta into separate parts" version="22.0.0">
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2 <description/>
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3 <macros>
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4 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <command detect_errors="aggressive"><![CDATA[
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9 'python $__tool_directory__/gff3_splitgff.py'
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10 '$input'
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11
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12 --gff '$gff_out'
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13 --fasta '$fasta_out'
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14 ]]></command>
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15 <inputs>
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16 <param label="Combined GFF3/Fasta File" name="input" type="data" format="gff,gff3"/>
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17 </inputs>
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18 <outputs>
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19 <data format="gff3" label="GFF Portion of ${input.name}" name="gff_out"/>
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20 <data format="fasta" label="Fasta Portion of ${input.name}" name="fasta_out"/>
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21 </outputs>
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22 <tests>
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23 <test>
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24 <param name="input" value="Miro_SplitIn.gff3"/>
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25 <output name="gff" file="Miro_SplitOut.gff3"/>
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26 <output name="fasta" file="Miro_SplitOut.fa"/>
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27 </test>
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28 </tests>
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29 <help><![CDATA[
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30 **What it does**
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31
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32 Splits apart the GFF3/Fasta data in a combined file into separate fasta and gff3 files.
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33 ]]></help>
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34 <expand macro="citations"/>
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35 </tool>