comparison generate-putative-osp.py @ 3:859e18a9814a draft

planemo upload commit 09a88823322bf86d7f05f008f9dabdb60a572d3a

2:05244a021b80

#!/usr/bin/env python
import argparse
from cpt import OrfFinder
from Bio import SeqIO
from Bio import Seq
from CPT_GFFParser import gffParse, gffWrite
from spaninFuncs import *
import re
import os
import sys

### Requirement Inputs
#### INPUT : Genomic FASTA
#### OUTPUT : Putative OSP candidates in FASTA format.
######### Optional OUTPUT: "Complete" potential ORFs, in BED/FASTAs/GFF3 formats

3:859e18a9814a

#!/usr/bin/env python
import argparse
from cpt import OrfFinder
from spaninFuncs import *
import re

### Requirement Inputs
#### INPUT : Genomic FASTA
#### OUTPUT : Putative OSP candidates in FASTA format.
######### Optional OUTPUT: "Complete" potential ORFs, in BED/FASTAs/GFF3 formats