Mercurial > repos > cpt > cpt_putative_osp

changeset 3:859e18a9814a draft

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planemo upload commit 09a88823322bf86d7f05f008f9dabdb60a572d3a
author cpt
date Fri, 20 Sep 2024 03:52:11 +0000
parents 05244a021b80
children 8f6c09b6a43d
files generate-putative-osp.py generate-putative-osp.xml
diffstat 2 files changed, 5 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/generate-putative-osp.py	Fri Jan 05 05:56:31 2024 +0000
+++ b/generate-putative-osp.py	Fri Sep 20 03:52:11 2024 +0000
@@ -1,13 +1,8 @@
 #!/usr/bin/env python
 import argparse
 from cpt import OrfFinder
-from Bio import SeqIO
-from Bio import Seq
-from CPT_GFFParser import gffParse, gffWrite
 from spaninFuncs import *
 import re
-import os
-import sys
 
 ### Requirement Inputs
 #### INPUT : Genomic FASTA
--- a/generate-putative-osp.xml	Fri Jan 05 05:56:31 2024 +0000
+++ b/generate-putative-osp.xml	Fri Sep 20 03:52:11 2024 +0000
@@ -2,10 +2,12 @@
     <description>constructs a putative list of potential o-spanin from an input genomic FASTA</description>
     <macros>
         <import>macros.xml</import>
-    
     </macros>
-    <expand macro="requirements">
-    </expand>
+    <requirements>
+        <requirement type="package" version="3.9">python</requirement>
+        <requirement type="package" version="1.84">biopython</requirement>
+        <requirement type="package" version="2024.9.11">regex</requirement>
+    </requirements>
     <command detect_errors="aggressive"><![CDATA[
 '$__tool_directory__/generate-putative-osp.py'
 '$fasta_file'