Mercurial > repos > cpt > cpt_putative_osp

changeset 4:8f6c09b6a43d draft default tip

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planemo upload commit 471832a126aa25d903becae9a074a6b7b1ff7092-dirty
author cpt
date Fri, 20 Sep 2024 04:02:40 +0000
parents 859e18a9814a
children
files cpt.py
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/cpt.py	Fri Sep 20 03:52:11 2024 +0000
+++ b/cpt.py	Fri Sep 20 04:02:40 2024 +0000
@@ -4,6 +4,7 @@
 from Bio import SeqIO
 from Bio.Data import CodonTable
 import logging
+import regex as re
 
 logging.basicConfig()
 log = logging.getLogger()
@@ -147,7 +148,7 @@
             if index % 3 != 0:
                 continue
             n = s[start:index]
-            for (offset, n, t) in self.start_chop_and_trans(n):
+            for offset, n, t in self.start_chop_and_trans(n):
                 if n and len(t) >= self.min_len:
                     yield start + offset, n, t
             start = index
@@ -294,7 +295,7 @@
             if index % 3 != 0:
                 continue
             n = s[start:index]
-            for (offset, n, t) in self.start_chop_and_trans(n):
+            for offset, n, t in self.start_chop_and_trans(n):
                 if n and len(t) >= self.min_len:
                     yield start + offset, n, t
             start = index