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date Fri, 05 Jan 2024 05:56:47 +0000
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1 <tool id="edu.tamu.cpt2.phage.read_garnier" name="Read Garnier Secondary Structure Prediction" version="1.0">
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2 <description>read garnier tool output</description>
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3 <macros>
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4 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <command detect_errors="aggressive"><![CDATA[
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9 python '$__tool_directory__/reading_garnier_output.py'
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10 '$tagseq_file'
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13 >'$output']]></command>
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14 <inputs>
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15 <param label="Tagseq" name="tagseq_file" type="data" format="tagseq"/>
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16 </inputs>
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17 <outputs>
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18 <data format="tabular" name="output"/>
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19 </outputs>
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20 <help><![CDATA[
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21 **What it does**
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22 This program takes output from the garnier tool (as a tagseq file) and converts it into structural predictions for each
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23 sequence analyzed by the garnier tool.
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25 ]]></help>
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26 <expand macro="citations"/>
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27 </tool>