Mercurial > repos > cpt > cpt_sar_finder
diff test-data/candidate_SAR_stats.tsv @ 1:112751823323 draft
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
| author | cpt |
|---|---|
| date | Mon, 05 Jun 2023 02:52:57 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/candidate_SAR_stats.tsv Mon Jun 05 02:52:57 2023 +0000 @@ -0,0 +1,6 @@ +Name Protein Sequence Protein Length SAR Length SAR Start Putative SAR Sequence SAR End ['S%', 'G%', 'A%', 'T%'] % Total N-term Sequence N-term net Charge +SAR-endolysin MAGIPKKLKAALLAVTIAGGGVGGYQEMTRQSLIHLENIAYMPYRDIAGVLTVCVGHTGPDIEMRRYSHAECMALLDSDLKPVYAAIDRLVRVPLTPYQKTALATFIFNTGVTAFSKSTLLKKLNAGDYAGARDQMARWVFAAGHKWKGLMNRREVEMAIWNIRGADDLRQ 171 17 9 KAALLAVTIAGGGVGGY 26 [('S', 0.0), ('G', 29.41), ('A', 23.53), ('T', 5.88)] 58.82 MAGIPKKL 2 +SAR-endolysin MAGIPKKLKAALLAVTIAGGGVGGYQEMTRQSLIHLENIAYMPYRDIAGVLTVCVGHTGPDIEMRRYSHAECMALLDSDLKPVYAAIDRLVRVPLTPYQKTALATFIFNTGVTAFSKSTLLKKLNAGDYAGARDQMARWVFAAGHKWKGLMNRREVEMAIWNIRGADDLRQ 171 16 10 AALLAVTIAGGGVGGY 26 [('S', 0.0), ('G', 31.25), ('A', 25.0), ('T', 6.25)] 62.5 MAGIPKKLK 3 +SAR-endolysin MAGIPKKLKAALLAVTIAGGGVGGYQEMTRQSLIHLENIAYMPYRDIAGVLTVCVGHTGPDIEMRRYSHAECMALLDSDLKPVYAAIDRLVRVPLTPYQKTALATFIFNTGVTAFSKSTLLKKLNAGDYAGARDQMARWVFAAGHKWKGLMNRREVEMAIWNIRGADDLRQ 171 15 9 KAALLAVTIAGGGVG 24 [('S', 0.0), ('G', 26.67), ('A', 26.67), ('T', 6.67)] 60.01 MAGIPKKL 2 +SAR-endolysin MAGIPKKLKAALLAVTIAGGGVGGYQEMTRQSLIHLENIAYMPYRDIAGVLTVCVGHTGPDIEMRRYSHAECMALLDSDLKPVYAAIDRLVRVPLTPYQKTALATFIFNTGVTAFSKSTLLKKLNAGDYAGARDQMARWVFAAGHKWKGLMNRREVEMAIWNIRGADDLRQ 171 15 10 AALLAVTIAGGGVGG 25 [('S', 0.0), ('G', 33.33), ('A', 26.67), ('T', 6.67)] 66.67 MAGIPKKLK 3 +SAR-endolysin MAGIPKKLKAALLAVTIAGGGVGGYQEMTRQSLIHLENIAYMPYRDIAGVLTVCVGHTGPDIEMRRYSHAECMALLDSDLKPVYAAIDRLVRVPLTPYQKTALATFIFNTGVTAFSKSTLLKKLNAGDYAGARDQMARWVFAAGHKWKGLMNRREVEMAIWNIRGADDLRQ 171 15 11 ALLAVTIAGGGVGGY 26 [('S', 0.0), ('G', 33.33), ('A', 20.0), ('T', 6.67)] 60.0 MAGIPKKLKA 3