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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:53:18 +0000
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1 # Data location for proximity to lysis project
2
3 ### lysis-family-v.1.0.3.json : Added new spanin domain synonyms. Terms found from spanin dbase analysis by @JRR.
4
5 # /attic
6 old/obsolete/unused data. Kept only to follow tracks.
7
8 ### lysis-family.json : houses synonyms for lysis queries
9 ### GO-lysis-query.json : GO term lysis synonyms found using goQuery.py
10 ### go-synonym-results.txt : tab-delimited results from initial goQuery.py
11 ### go-synonym-results-JRR.txt : @JRR culled results from go-synonym-results.txt
12 ### lysis-family-expanded.json : Merged results from lysis-family.json and GO-lysis-query.json
13 ### lysis-family-expanded_culled.json : Cleaned up version of the expanded.json
14 ### lysis-family-v.1.0.0.json : First offical version of lysis family dbase. Revised based on additions/critiques by @LM and @JRR
15 ### lysis-family-v.1.0.1.json : Added new domains for both holins and spanins.
16 ### lysis-family-v.1.0.2.json : Added new spanin synonyms.
17
18 # /term_additions
19 * Files made by @JRR and/or @LTM to add terms to the database
20 ### endolysin domains to add.txt : citation ==> [PMID: 30873139](https://www.ncbi.nlm.nih.gov/pubmed/30873139)
21 ### 200505_Spanin_Domains.txt : citation ==> [Spanin Interpro](http://www.ebi.ac.uk/interpro/search/text/spanin/?page=1#table)
22 ### 200505_holin_domains.txt : citation ==> [Holin Interpro](http://www.ebi.ac.uk/interpro/search/text/holin/?page=1#table)