view data/README.md @ 1:6e3a843b6304 draft

planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:53:18 +0000
parents
children
line wrap: on
line source

# Data location for proximity to lysis project

### lysis-family-v.1.0.3.json : Added new spanin domain synonyms. Terms found from spanin dbase analysis by @JRR.

# /attic
old/obsolete/unused data. Kept only to follow tracks.

### lysis-family.json : houses synonyms for lysis queries
### GO-lysis-query.json : GO term lysis synonyms found using goQuery.py
### go-synonym-results.txt : tab-delimited results from initial goQuery.py
### go-synonym-results-JRR.txt : @JRR culled results from go-synonym-results.txt
### lysis-family-expanded.json : Merged results from lysis-family.json and GO-lysis-query.json
### lysis-family-expanded_culled.json : Cleaned up version of the expanded.json
### lysis-family-v.1.0.0.json : First offical version of lysis family dbase. Revised based on additions/critiques by @LM and @JRR
### lysis-family-v.1.0.1.json : Added new domains for both holins and spanins.
### lysis-family-v.1.0.2.json : Added new spanin synonyms.

# /term_additions
* Files made by @JRR and/or @LTM to add terms to the database
### endolysin domains to add.txt : citation ==> [PMID: 30873139](https://www.ncbi.nlm.nih.gov/pubmed/30873139)
### 200505_Spanin_Domains.txt : citation ==> [Spanin Interpro](http://www.ebi.ac.uk/interpro/search/text/spanin/?page=1#table)
### 200505_holin_domains.txt : citation ==> [Holin Interpro](http://www.ebi.ac.uk/interpro/search/text/holin/?page=1#table)