view data/attic/lysis-family-v1.0.0.json @ 2:21ae0e340d80 draft default tip

planemo upload commit f33bdf952d796c5d7a240b132af3c4cbd102decc

{
    "endolysins": [
        "serine protease inhibitor complex",
        "lysin",
        "peptidoglycan stem peptide endopeptidase",
        "serpin complex",
        "peptidoglycan endopeptidase",
        "mucopeptide N-acetylmuramoylhydrolase",
        "peptidoglycan muralytic",
        "omega-amidase",
        "protein-N-terminal glutamine amidohydrolase",
        "glycosylase",
        "threonine endopeptidase",
        "w-amidase",
        "serine-type endopeptidase inhibitor complex",
        "beta-1,4-poly-N-acetyl glucosamidinase",
        "muralytic",
        "omega-amidodicarboxylate amidohydrolase",
        "endopeptidase activator",
        "lysozyme inhibitor",
        "threonine-type endopeptidase",
        "hydrolase",
        "endopeptidase regulator",
        "endopeptidase",
        "penicillin amidohydrolase",
        "poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase",
        "1,4-N-acetylmuramidase",
        "benzylpenicillin acylase",
        "aspartic-type endopeptidase inhibitor",
        "endolysin",
        "acylamide amidohydrolase",
        "cytolysis",
        "prevention of cysteine-type endopeptidase",
        "carboxypeptidase",
        "alpha-keto acid-omega-amidase",
        "fatty acylamidase",
        "acylamidase",
        "calcium-dependent cysteine-type endopeptidase",
        "lysozyme",
        "activation of cysteine-type endopeptidase",
        "serine-type endopeptidase",
        "small conjugating protein-specific endopeptidase",
        "amidohydrolase",
        "peptidoglycan N-acetylmuramoylhydrolase",
        "acetamidase",
        "ubiquitin-like protein-specific endopeptidase",
        "chitodextrinase",
        "aspartic-type endopeptidase",
        "palmitoleoyl [acyl-carrier protein]-dependent acyltransferase",
        "muramidase",
        "endopeptidase complex",
        "N-acetylaminohydrolase",
        "endopeptidase inhibitor",
        "semacylase",
        "penicillin acylase",
        "PNGase",
        "penicillin amidase",
        "acylase",
        "NtQ-amidase",
        "N-linked-glycopeptide-(N-acetyl-beta-D-glucosaminyl)-L-asparagine amidohydrolase",
        "alpha-acylamino-beta-lactam acylhydrolase",
        "serine-type endopeptidase inhibitor",
        "poly-beta-glucosaminidase",
        "glycosidase",
        "mucopeptide glucohydrolase",
        "serine-type endopeptidase complex",
        "cysteine-type endopeptidase inhibitor",
        "amidase",
        "peptidoglycan cross-bridge peptide endopeptidase",
        "cysteine-type endopeptidase",
        "1,4-beta-poly-N-acetylglucosaminidase",
        "chitinase",
        "muraminidase",
        "ampicillin acylase",
        "peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase",
        "thiol endopeptidase",
        "aspartic endopeptidase",
        "N,O-diacetylmuramidase"
    ],
    "holins": [
        "canonical holin",
        "holin",
        "antiholin",
        "cytolysis",
        "pinholin",
        "anti-holin",
        "anti-holins",
        "co-holin",
        "co-holins"
    ],
    "endolysin_domains": [
        "2-acetamido-4-O-(2-amino-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-D-glucose exo-beta-D-glucosaminidase",
        "aspartylglycosylamine amidohydrolase",
        "4-N-(beta-N-acetyl-D-glucosaminyl)-L-asparagine amidohydrolase",
        "endo-beta-N-acetylglucosaminidase L",
        "exo-beta-D-glucosaminidase",
        "alpha-N-acetylglucosaminidase",
        "sucrose:1,6-alpha-D-glucan 3(6)-alpha-D-glucosyltransferase",
        "peptidoglycan lytic transglycosylase",
        "N-acetylhexosaminidase",
        "endo-beta-N-acetylglucosaminidase H",
        "viral exit from host cell by cytolysis",
        "glycopeptide-D-mannosyl-4-N-(N-acetyl-D-glucosaminyl)2-asparagine 1,4-N-acetyl-beta-glucosaminohydrolase",
        "N-acetyl-beta-glucosaminidase",
        "beta-aspartylglucosylamine amidohydrolase",
        "N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine amidohydrolase",
        "endo-N-acetyl-beta-glucosaminidase",
        "alpha-N-acetyl-D-glucosaminide N-acetylglucosaminohydrolase",
        "alpha-acetylglucosaminidase",
        "alpha-D-2-acetamido-2-deoxyglucosidase",
        "soluble lytic transglycosylase",
        "4-alpha-glucanotransferase",
        "beta-acetylhexosaminidinase",
        "non-lytic viral release",
        "viral release by cell lysis",
        "Peptidase_M15_3",
        "beta-hexosaminidase",
        "Peptidase_M15_4",
        "DUF3597",
        "YkuD",
        "endo-beta-(1->4)-N-acetylglucosaminidase",
        "Peptidase_M23",
        "beta-1,4-poly-N-acetyl glucosamidinase",
        "peptidoglycan glycosyltransferase",
        "lysis of host organelle involved in viral entry into host cell",
        "poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase",
        "aspartylglucosylaminidase",
        "transferase",
        "beta-N-acetyl-D-hexosaminide N-acetylhexosaminohydrolase",
        "N-acetyl-alpha-D-glucosaminidase",
        "Peptidase_U40",
        "sucrose:1,6-alpha-D-glucan 3-alpha- and 6-alpha-glucosyltransferase",
        "endo-N-acetyl-beta-D-glucosaminidase",
        "viral release from host cell by cytolysis",
        "endoglycosidase S",
        "beta-D-hexosaminidase",
        "undecaprenyldiphospho-N-acetyl-D-glucosaminyl-(1->4)-(N-acetyl-D-muramoylpentapeptide):undecaprenyldiphospho-(N-acetyl-D-glucosaminyl-(1->4)-N-acetyl-D-muramoylpentapeptide) disaccharidetransferase",
        "transglycosidase",
        "mannosyl-glycoprotein endo-beta-N-acetylglucosamidase",
        "mannosyl-glycoprotein 1,4-N-acetamidodeoxy-beta-D-glycohydrolase",
        "chitosan glucosaminohydrolase",
        "aspartylglucosaminidase",
        "oligo-1,4-1,4-glucantransferase",
        "peptidoglycan transglycosylase",
        "endo-beta-N-acetylglucosaminidase",
        "Amidase_5",
        "Glyco_hydro_19",
        "amylomaltase",
        "lytic transglycosylase",
        "1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-alpha-D-(1,4-alpha-D-glucano)-transferase",
        "beta-acetylaminodeoxyhexosidase",
        "peptidoglycan TGase",
        "dextrin transglycosylase",
        "amylo-(1,4 to 1,6)transglucosidase",
        "alpha-1,4-glucan:alpha-1,4-glucan-6-glycosyltransferase",
        "aspartylglucosylamine deaspartylase",
        "exochitosanase",
        "Glyco_hydro_25",
        "glycosyltransferase",
        "N-acetyl-beta-D-hexosaminidase",
        "chitosan exo-1,4-beta-D-glucosaminidase",
        "mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase",
        "lytic endotransglycosylase",
        "NLPC_P60",
        "beta-N-acetyl-D-hexosaminidase",
        "lytic viral release",
        "VanY",
        "N-acetyl-beta-hexosaminidase",
        "N-aspartyl-beta-glucosaminidase",
        "amylo-(1,4->1,6)-transglycosylase",
        "beta-D-N-acetylhexosaminidase",
        "exo-1,4-beta-D-glucosaminidase",
        "glucosan transglycosylase",
        "aspartylglucosylaminase",
        "Glyco_hydro_108",
        "amylose isomerase",
        "N-acetyl-alpha-glucosaminidase",
        "Glucosaminidase",
        "N4-(beta-N-acetylglucosaminyl)-L-asparaginase",
        "Amidase_2",
        "alpha-glucan-branching glycosyltransferase",
        "1,4-alpha-D-glucan:1,4-alpha-D-glucan 4-alpha-D-glycosyltransferase",
        "glycopeptide-D-mannosyl-N4-(N-acetyl-D-glucosaminyl)2-asparagine 1,4-N-acetyl-beta-glucosaminohydrolase",
        "endoglycosidase H",
        "debranching enzyme maltodextrin glycosyltransferase",
        "Transglycosylase",
        "bactoprenyldiphospho-N-acetylmuramoyl-(N-acetyl-D-glucosaminyl)-pentapeptide:peptidoglycan N-acetylmuramoyl-N-acetyl-D-glucosaminyltransferase",
        "Amidase02_C",
        "Chitinase",
        "1,4-alpha-glucan branching enzyme",
        "glucosyl-N-acetylglucosamine glucosaminidase",
        "glycosylasparaginase",
        "beta-N-acetylhexosaminidase",
        "PG-II",
        "di-N-acetylchitobiosyl beta-N-acetylglucosaminidase",
        "1,4-glucan-6-(1,4-glucano)-transferase",
        "sucrose-1,6-alpha-glucan 3(6)-alpha-glucosyltransferase",
        "chitodextrinase",
        "glycogen branching enzyme",
        "endo-beta-N-acetylglucosaminidase D",
        "NlpD",
        "Peptidase_C39_2",
        "endo-beta-acetylglucosaminidase",
        "branching glycosyltransferase",
        "viral release by host cell lysis",
        "N,N'-diacetylchitobiosyl beta-N-acetylglucosaminidase",
        "poly-beta-glucosaminidase",
        "transglycosylase",
        "viral penetration via lysis of host organellar membrane",
        "NAG",
        "1,4-beta-poly-N-acetylglucosaminidase",
        "chitinase",
        "endo-beta-N-acetylglucosaminidase F",
        "Amidase_3",
        "VANY",
        "PET-C39-2",
        "TRANG",
        "PET-15-4",
        "AMI-5",
        "PET-U40",
        "NLPC-P60",
        "PET-M23",
        "YKUD",
        "GH25",
        "GH19",
        "CHAP",
        "PET-15-3",
        "GLUCO",
        "GH108",
        "NLPD",
        "AMI-2",
        "SLT",
        "AMI-3",
        "AMIO2-C",
        "GyH",
        "SLAP",
        "FOG",
        "PG_binding_1",
        "SH3b",
        "PG_binding_3",
        "SH3-related",
        "ChW",
        "SH3_3",
        "SH3_5",
        "Cpl-7",
        "LGFP",
        "SPOR",
        "LysM",
        "CPL7",
        "SH3-3",
        "SLAP",
        "FOG",
        "SH3b",
        "SH3-r",
        "CHW",
        "PG-3",
        "PG-1",
        "LGFP",
        "LYSM",
        "SPOR",
        "SH3-5",
        "cell wall amidase",
        "CWA",
        "N-acetylmuramoyl-L-alanine amidase of type 2",
        "NALAA-2",
        "IPR002502",
        "PF01510",
        "SM00644",
        "SSF55846",
        "G3DSA:3.40.80.10",
        "CD06583",
        "SLT1",
        "soluble lytic murein transglycosylase of type 1",
        "IPR010618",
        "TG",
        "IPR010618 (transglycosylase)",
        "PGB1",
        "peptidoglycan binding domain type 1",
        "IPR002477",
        "sporulation-related",
        "IPR007730",
        "sarcoma [src] homology 3 of type 3",
        "PF08329 (SH3-3)",
        "sarcoma [src] homology 3 of type 5",
        "PF08460 (SH3-5)",
        "sarcoma [src] homology 3 of type 8",
        "SH3-8",
        "PF13457",
        "S-layer protien",
        "IPR024968",
        "lysin motif",
        "IPR018392",
        "CW7",
        "cell wall binding domain of Cpl-7",
        "IPR013168",
        "SLH",
        "S-layer homology domain",
        "IPR001119",
        "CWB1",
        "cell wall binding repeat of type 1",
        "IPR018337",
        "CWB2",
        "cell wall binding repeat of type 2",
        "IPR007253",
        "clostridial hydrophobic repeat with a conserved W residue",
        "IPR006637",
        "N-acetylmuramoyl-L-alanine amidase of type 3",
        "NALAA-3",
        "IPR002508",
        "PF01520",
        "SM00646",
        "G3DSA:3.40.630.40",
        "CD2696",
        "AMIN",
        "N-terminal nonamidase",
        "IPR021731",
        "SH3-4",
        "sarcoma [src] homology 3 of type 4",
        "PF06347",
        "N-acetylmuramoyl-L-alanine amidase of type 5",
        "NALAA-5",
        "IPR008044",
        "PF05382",
        "cell wall glycosidases",
        "CWG",
        "glycoside hydrolase family 3",
        "GHF-3",
        "IPR002772",
        "IPR001764",
        "PF01915",
        "SSF52279",
        "G3DSA:3.40.50.1700",
        "PF00933",
        "PR00133",
        "G3DSA:3.20.20.300",
        "CWBD1",
        "LPXTG",
        "glycoside hydrolase family 73",
        "GHF-73",
        "IPR002901",
        "PF01832",
        "SM00047",
        "MltG",
        "membrane-bound lytic transglycosylase of type G",
        "IPR003770",
        "CWBD2",
        "glycoside hydrolase family 22",
        "GHF-22",
        "IPR001916",
        "PF00062",
        "glycoside hydrolase family 24",
        "GHF-24",
        "IPR002196",
        "2ANV",
        "2ANX",
        "glycoside hydrolase family 25",
        "GHF-25",
        "IPR002053",
        "PF01183",
        "cell wall peptidase",
        "CWP",
        "cysteine histidine-dependent amidohydrolases/peptidase",
        "IPR007921",
        "PF05257",
        "PS50911",
        "SleB",
        "Spore cortex-lytic enzyme of Bacilus",
        "IPR011105",
        "SLT2",
        "soluble lytic murein transglycosylase of type 2",
        "IPR031304",
        "N lipoprotein C/protein of 60-kDa",
        "NlpC/P60",
        "IPR000064",
        "PF0877",
        "G3DSA:3.90.1720.10",
        "PGB2",
        "peptidoglycan binding domain of type 2",
        "IPR014927",
        "SH3-1",
        "sarcoma [src] homology 3 of type 1",
        "PF00018",
        "SH3-2",
        "sarcoma [src] homology 3 of type 2",
        "PF07653",
        "SH3-6",
        "sarcoma [src] homology 3 of type 6",
        "PF12913",
        "SH3-7",
        "sarcoma [src] homology 3 of type 7",
        "PF12914",
        "Peptidase M14",
        "PM14",
        "IPR000834",
        "PF00246",
        "PS00132",
        "PR00765",
        "SM00631",
        "Peptidase M15",
        "PM15",
        "IPR000755",
        "PF01427",
        "MF01924",
        "PIRSF026671",
        "PGB3",
        "peptidoglycan binding domain of type 3",
        "IPR018537",
        "Peptidase M23",
        "PM23",
        "IPR016047",
        "PF01551",
        "RlpA",
        "rare lipoprotein A",
        "IPR034718",
        "SH3-9",
        "sarcoma [src] homology 3 of type 9",
        "PF14604",
        "Peptidase M74",
        "PM74",
        "IPR005073",
        "PF03411",
        "MF01623",
        "PIRSF018455",
        "Peptidase S11",
        "PS11",
        "IPR001967",
        "PF00768",
        "Peptidase S13",
        "PS13",
        "IPR000667",
        "PF02113",
        "TIGR00666",
        "PR0922",
        "Peptidase S66",
        "PS66",
        "IPR003507",
        "PF02016",
        "PIRSF028757",
        "Transpeptidase",
        "TP",
        "IPR0005490",
        "PF03734",
        "PGB4",
        "peptidoglycan binding domain of type 4",
        "IPR022029"
    ]
}