Mercurial > repos > crs4 > blat

view tool_dependencies.xml @ 0:0a71a7d35d09 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author crs4
date Wed, 16 Oct 2013 13:54:38 -0400
parents
children c4ad58c4bc7d
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
  <package name="blat" version="35">
<!--    <repository name="package_blat_35x1" owner="iuc" /> This may be used instead of everything inside <install> when a stable Galaxy release will support the 'download_binary' action type -->
    <install version="1.0">
      <actions>
        <action type="download_by_url" target_filename="blatSrc.zip">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action>
        <action type="shell_command">export MACHTYPE=`uname -m` &amp;&amp; export HOME=$INSTALL_DIR &amp;&amp; mkdir -p $HOME/bin/$MACHTYPE &amp;&amp; make</action>
        <action type="set_environment">
          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/`uname -m`</environment_variable>
        </action>
      </actions>
    </install>
  </package>
</tool_dependency>