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Add version_command element. Add test case from Joachim Jacob's blat wrapper: http://testtoolshed.g2.bx.psu.edu/view/joachim-jacob/blat . Add readme section to tool_dependencies.xml .
author crs4
date Mon, 28 Oct 2013 12:40:29 -0400
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OR83b	ENA|CAKG01028373|CAKG01028373.1	91.94	521	42	0	2858	3378	822	302	5.6e-258	886.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	92.99	314	22	0	2480	2793	1425	1112	2.2e-152	535.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	91.38	116	8	1	22	135	4691	4576	1.6e-46	184.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	81.12	143	27	0	634	776	4064	3922	5.7e-45	178.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	89.57	115	7	2	1388	1501	2884	2774	3.0e-43	173.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	83.81	105	17	0	1879	1983	2416	2312	3.4e-36	149.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	96.49	57	2	0	1628	1684	2656	2600	6.6e-23	105.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	87.01	77	7	3	469	543	4226	4151	7.7e-21	98.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	94.55	55	2	1	1806	1859	2478	2424	5.0e-19	92.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	76.00	100	18	2	2003	2101	2297	2203	1.0e-18	91.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	97.30	37	1	0	1751	1787	2534	2498	1.7e-11	67.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	93.55	31	2	0	2309	2339	1614	1584	2.2e-06	50.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	92.59	27	2	0	2420	2446	1479	1453	6.0e-05	46.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	89.66	29	3	0	199	227	4483	4455	1.1e-04	45.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	91.30	23	2	0	1710	1732	2577	2555	3.7e-03	40.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	100.00	19	0	0	1537	1555	2731	2713	1.2e-02	38.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	95.00	20	1	0	1594	1613	2692	2673	2.1e-02	37.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	95.83	24	0	1	1321	1344	2947	2925	5.2e-02	36.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	100.00	18	0	0	1240	1257	3024	3007	1.1e-01	35.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	94.74	19	1	0	1293	1311	2976	2958	1.7e-01	34.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	95.00	20	1	0	162	181	4519	4500	1.8e-01	34.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	94.12	17	1	0	449	465	4245	4229	3.3e+00	30.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	100.00	13	0	0	2287	2299	1629	1617	1.0e+02	25.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	94.12	17	0	1	1271	1286	2997	2981	5.7e+02	22.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	92.31	13	1	0	2448	2460	1450	1438	2.1e+03	20.0
OR83b	ENA|CAKG01028373|CAKG01028373.1	100.00	10	0	0	1693	1702	2593	2584	3.0e+03	20.0