Mercurial > repos > crs4 > prokka

comparison test-data/out.sqn @ 8:392255fa7ab9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9a92d439f147a5cf2370e0686854911107de1144
author iuc
date Fri, 28 Oct 2016 13:03:19 -0400
parents
children a17498c603ec
comparison
equal deleted inserted replaced
7:f5e44aad6498 8:392255fa7ab9
1 Seq-entry ::= set {
2 class genbank ,
3 seq-set {
4 seq {
5 id {
6 local
7 str "contig1" } ,
8 descr {
9 source {
10 org {
11 taxname "Genus species" ,
12 orgname {
13 mod {
14 {
15 subtype strain ,
16 subname "strain" } } ,
17 gcode 11 } } } ,
18 molinfo {
19 biomol genomic } ,
20 comment "Annotated using prokka 1.11 from
21 http://www.vicbioinformatics.com" ,
22 user {
23 type
24 str "NcbiCleanup" ,
25 data {
26 {
27 label
28 str "method" ,
29 data
30 str "SeriousSeqEntryCleanup" } ,
31 {
32 label
33 str "version" ,
34 data
35 int 8 } ,
36 {
37 label
38 str "month" ,
39 data
40 int 10 } ,
41 {
42 label
43 str "day" ,
44 data
45 int 11 } ,
46 {
47 label
48 str "year" ,
49 data
50 int 2016 } } } ,
51 create-date
52 std {
53 year 2016 ,
54 month 10 ,
55 day 11 } } ,
56 inst {
57 repr raw ,
58 mol dna ,
59 length 350 ,
60 seq-data
61 iupacna "GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGA
62 AAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAG
63 AAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTGTCAAA
64 AACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACA
65 TTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC" } } ,
66 set {
67 class nuc-prot ,
68 descr {
69 source {
70 org {
71 taxname "Genus species" ,
72 orgname {
73 mod {
74 {
75 subtype strain ,
76 subname "strain" } } ,
77 gcode 11 } } } ,
78 comment "Annotated using prokka 1.11 from
79 http://www.vicbioinformatics.com" ,
80 user {
81 type
82 str "NcbiCleanup" ,
83 data {
84 {
85 label
86 str "method" ,
87 data
88 str "SeriousSeqEntryCleanup" } ,
89 {
90 label
91 str "version" ,
92 data
93 int 8 } ,
94 {
95 label
96 str "month" ,
97 data
98 int 10 } ,
99 {
100 label
101 str "day" ,
102 data
103 int 11 } ,
104 {
105 label
106 str "year" ,
107 data
108 int 2016 } } } ,
109 create-date
110 std {
111 year 2016 ,
112 month 10 ,
113 day 11 } } ,
114 seq-set {
115 seq {
116 id {
117 local
118 str "contig2" } ,
119 descr {
120 molinfo {
121 biomol genomic } } ,
122 inst {
123 repr raw ,
124 mol dna ,
125 length 840 ,
126 seq-data
127 iupacna "TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTG
128 AACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAG
129 ATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTT
130 GCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTT
131 ATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATG
132 GCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTA
133 CTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCGGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGG
134 CGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGG
135 TCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCG
136 TATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGT
137 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGA
138 CTCTA" } } ,
139 seq {
140 id {
141 local
142 str "contig2_1" } ,
143 descr {
144 title "hypothetical protein PROKKA_00001 [Genus species]" ,
145 molinfo {
146 biomol peptide ,
147 tech concept-trans } } ,
148 inst {
149 repr raw ,
150 mol aa ,
151 length 152 ,
152 seq-data
153 ncbieaa "MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCV
154 EACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTD
155 VLTDAEENVRQKLRAEGVM" } ,
156 annot {
157 {
158 data
159 ftable {
160 {
161 id
162 local
163 id 3 ,
164 data
165 prot {
166 name {
167 "hypothetical protein" } } ,
168 location
169 int {
170 from 0 ,
171 to 151 ,
172 id
173 local
174 str "contig2_1" } } } } } } ,
175 seq {
176 id {
177 local
178 str "contig2_2" } ,
179 descr {
180 title "hypothetical protein PROKKA_00002 [Genus species]" ,
181 molinfo {
182 biomol peptide ,
183 tech concept-trans } } ,
184 inst {
185 repr raw ,
186 mol aa ,
187 length 38 ,
188 seq-data
189 ncbieaa "MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF" } ,
190 annot {
191 {
192 data
193 ftable {
194 {
195 id
196 local
197 id 4 ,
198 data
199 prot {
200 name {
201 "hypothetical protein" } } ,
202 location
203 int {
204 from 0 ,
205 to 37 ,
206 id
207 local
208 str "contig2_2" } } } } } } } ,
209 annot {
210 {
211 data
212 ftable {
213 {
214 id
215 local
216 id 1 ,
217 data
218 cdregion {
219 frame one ,
220 code {
221 id 11 } } ,
222 product
223 whole
224 local
225 str "contig2_1" ,
226 location
227 int {
228 from 39 ,
229 to 497 ,
230 strand plus ,
231 id
232 local
233 str "contig2" } ,
234 qual {
235 {
236 qual "inference" ,
237 val "ab initio prediction:Prodigal:2.60" } } ,
238 xref {
239 {
240 data
241 gene {
242 locus-tag "PROKKA_00001" } } } } ,
243 {
244 id
245 local
246 id 2 ,
247 data
248 cdregion {
249 frame one ,
250 code {
251 id 11 } } ,
252 product
253 whole
254 local
255 str "contig2_2" ,
256 location
257 int {
258 from 497 ,
259 to 613 ,
260 strand plus ,
261 id
262 local
263 str "contig2" } ,
264 qual {
265 {
266 qual "inference" ,
267 val "ab initio prediction:Prodigal:2.60" } } ,
268 xref {
269 {
270 data
271 gene {
272 locus-tag "PROKKA_00002" } } } } } } } } ,
273 seq {
274 id {
275 local
276 str "contig3" } ,
277 descr {
278 source {
279 org {
280 taxname "Genus species" ,
281 orgname {
282 mod {
283 {
284 subtype strain ,
285 subname "strain" } } ,
286 gcode 11 } } } ,
287 molinfo {
288 biomol genomic } ,
289 comment "Annotated using prokka 1.11 from
290 http://www.vicbioinformatics.com" ,
291 user {
292 type
293 str "NcbiCleanup" ,
294 data {
295 {
296 label
297 str "method" ,
298 data
299 str "SeriousSeqEntryCleanup" } ,
300 {
301 label
302 str "version" ,
303 data
304 int 8 } ,
305 {
306 label
307 str "month" ,
308 data
309 int 10 } ,
310 {
311 label
312 str "day" ,
313 data
314 int 11 } ,
315 {
316 label
317 str "year" ,
318 data
319 int 2016 } } } ,
320 create-date
321 std {
322 year 2016 ,
323 month 10 ,
324 day 11 } } ,
325 inst {
326 repr raw ,
327 mol dna ,
328 length 210 ,
329 seq-data
330 iupacna "CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATT
331 AAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTT
332 CTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA" } } ,
333 set {
334 class nuc-prot ,
335 descr {
336 source {
337 org {
338 taxname "Genus species" ,
339 orgname {
340 mod {
341 {
342 subtype strain ,
343 subname "strain" } } ,
344 gcode 11 } } } ,
345 comment "Annotated using prokka 1.11 from
346 http://www.vicbioinformatics.com" ,
347 user {
348 type
349 str "NcbiCleanup" ,
350 data {
351 {
352 label
353 str "method" ,
354 data
355 str "SeriousSeqEntryCleanup" } ,
356 {
357 label
358 str "version" ,
359 data
360 int 8 } ,
361 {
362 label
363 str "month" ,
364 data
365 int 10 } ,
366 {
367 label
368 str "day" ,
369 data
370 int 11 } ,
371 {
372 label
373 str "year" ,
374 data
375 int 2016 } } } ,
376 create-date
377 std {
378 year 2016 ,
379 month 10 ,
380 day 11 } } ,
381 seq-set {
382 seq {
383 id {
384 local
385 str "contig4" } ,
386 descr {
387 molinfo {
388 biomol genomic } } ,
389 inst {
390 repr raw ,
391 mol dna ,
392 length 1260 ,
393 seq-data
394 iupacna "ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCT
395 TAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGAC
396 TGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCA
397 TACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGA
398 CGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAAC
399 GTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGG
400 CACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGC
401 TTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGT
402 TTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTC
403 TCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTAT
404 TCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGAC
405 CGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAACGCC
406 GAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTTAGGAGTTTA
407 ATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGTTCTCACTTCTGTTACTCCA
408 GCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTATATTTTGATAGTTTGACGGTTAATGCT
409 GGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTGTCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCT
410 GATATTGCTTTTGATGCCGACCCTAAATTTTTTGC" } } ,
411 seq {
412 id {
413 local
414 str "contig4_1" } ,
415 descr {
416 title "hypothetical protein PROKKA_00003 [Genus species]" ,
417 molinfo {
418 biomol peptide ,
419 tech concept-trans } } ,
420 inst {
421 repr raw ,
422 mol aa ,
423 length 287 ,
424 seq-data
425 ncbieaa "MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMG
426 LQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSV
427 PRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQW
428 YRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMTS" } ,
429 annot {
430 {
431 data
432 ftable {
433 {
434 id
435 local
436 id 6 ,
437 data
438 prot {
439 name {
440 "hypothetical protein" } } ,
441 location
442 int {
443 from 0 ,
444 to 286 ,
445 id
446 local
447 str "contig4_1" } } } } } } } ,
448 annot {
449 {
450 data
451 ftable {
452 {
453 id
454 local
455 id 5 ,
456 data
457 cdregion {
458 frame one ,
459 code {
460 id 11 } } ,
461 product
462 whole
463 local
464 str "contig4_1" ,
465 location
466 int {
467 from 20 ,
468 to 883 ,
469 strand plus ,
470 id
471 local
472 str "contig4" } ,
473 qual {
474 {
475 qual "inference" ,
476 val "ab initio prediction:Prodigal:2.60" } } ,
477 xref {
478 {
479 data
480 gene {
481 locus-tag "PROKKA_00003" } } } } } } } } ,
482 set {
483 class nuc-prot ,
484 descr {
485 source {
486 org {
487 taxname "Genus species" ,
488 orgname {
489 mod {
490 {
491 subtype strain ,
492 subname "strain" } } ,
493 gcode 11 } } } ,
494 comment "Annotated using prokka 1.11 from
495 http://www.vicbioinformatics.com" ,
496 user {
497 type
498 str "NcbiCleanup" ,
499 data {
500 {
501 label
502 str "method" ,
503 data
504 str "SeriousSeqEntryCleanup" } ,
505 {
506 label
507 str "version" ,
508 data
509 int 8 } ,
510 {
511 label
512 str "month" ,
513 data
514 int 10 } ,
515 {
516 label
517 str "day" ,
518 data
519 int 11 } ,
520 {
521 label
522 str "year" ,
523 data
524 int 2016 } } } ,
525 create-date
526 std {
527 year 2016 ,
528 month 10 ,
529 day 11 } } ,
530 seq-set {
531 seq {
532 id {
533 local
534 str "contig5" } ,
535 descr {
536 molinfo {
537 biomol genomic } } ,
538 inst {
539 repr raw ,
540 mol dna ,
541 length 490 ,
542 seq-data
543 iupacna "CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTAT
544 GATGTTTATCCTTTGAATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCC
545 CGTACGCCGGGCAATAACGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGTT
546 TCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGCTATTGCTG
547 GCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCA
548 TTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCT
549 CTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG" } } ,
550 seq {
551 id {
552 local
553 str "contig5_1" } ,
554 descr {
555 title "hypothetical protein PROKKA_00004 [Genus species]" ,
556 molinfo {
557 biomol peptide ,
558 tech concept-trans } } ,
559 inst {
560 repr raw ,
561 mol aa ,
562 length 43 ,
563 seq-data
564 ncbieaa "MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL" } ,
565 annot {
566 {
567 data
568 ftable {
569 {
570 id
571 local
572 id 8 ,
573 data
574 prot {
575 name {
576 "hypothetical protein" } } ,
577 location
578 int {
579 from 0 ,
580 to 42 ,
581 id
582 local
583 str "contig5_1" } } } } } } } ,
584 annot {
585 {
586 data
587 ftable {
588 {
589 id
590 local
591 id 7 ,
592 data
593 cdregion {
594 frame one ,
595 code {
596 id 11 } } ,
597 product
598 whole
599 local
600 str "contig5_1" ,
601 location
602 int {
603 from 274 ,
604 to 405 ,
605 strand plus ,
606 id
607 local
608 str "contig5" } ,
609 qual {
610 {
611 qual "inference" ,
612 val "ab initio prediction:Prodigal:2.60" } } ,
613 xref {
614 {
615 data
616 gene {
617 locus-tag "PROKKA_00004" } } } } } } } } ,
618 set {
619 class nuc-prot ,
620 descr {
621 source {
622 org {
623 taxname "Genus species" ,
624 orgname {
625 mod {
626 {
627 subtype strain ,
628 subname "strain" } } ,
629 gcode 11 } } } ,
630 comment "Annotated using prokka 1.11 from
631 http://www.vicbioinformatics.com" ,
632 user {
633 type
634 str "NcbiCleanup" ,
635 data {
636 {
637 label
638 str "method" ,
639 data
640 str "SeriousSeqEntryCleanup" } ,
641 {
642 label
643 str "version" ,
644 data
645 int 8 } ,
646 {
647 label
648 str "month" ,
649 data
650 int 10 } ,
651 {
652 label
653 str "day" ,
654 data
655 int 11 } ,
656 {
657 label
658 str "year" ,
659 data
660 int 2016 } } } ,
661 create-date
662 std {
663 year 2016 ,
664 month 10 ,
665 day 11 } } ,
666 seq-set {
667 seq {
668 id {
669 local
670 str "contig6" } ,
671 descr {
672 molinfo {
673 biomol genomic } } ,
674 inst {
675 repr raw ,
676 mol dna ,
677 length 1960 ,
678 seq-data
679 iupacna "GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCAC
680 TTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCG
681 TGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGT
682 TGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAA
683 TGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAA
684 TGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCA
685 ACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAAT
686 CAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTC
687 TCATATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGG
688 TATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTC
689 TAGGAAATAACCGTCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGT
690 TCGTTCTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGA
691 GGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGCTCTT
692 GGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATGTTGACGGCCATAAGGCTGC
693 TTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGAATTGGCACAATGCTACAATGTGCTCCC
694 CCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGT
695 TACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAA
696 AGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTT
697 GATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATT
698 AGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGG
699 TCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCT
700 TCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAA
701 TCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGA
702 CGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGT
703 TGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATG
704 GAACAACTCACTAAAAACCAAGCTGTCGCTACT" } } ,
705 seq {
706 id {
707 local
708 str "contig6_1" } ,
709 descr {
710 title "hypothetical protein PROKKA_00005 [Genus species]" ,
711 molinfo {
712 biomol peptide ,
713 tech concept-trans } } ,
714 inst {
715 repr raw ,
716 mol aa ,
717 length 253 ,
718 seq-data
719 ncbieaa "MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRDYLAAAFPELNA
720 WERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLAYQQKESTA
721 RVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNV
722 VTDAASGVVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK" } ,
723 annot {
724 {
725 data
726 ftable {
727 {
728 id
729 local
730 id 10 ,
731 data
732 prot {
733 name {
734 "hypothetical protein" } } ,
735 location
736 int {
737 from 0 ,
738 to 252 ,
739 id
740 local
741 str "contig6_1" } } } } } } } ,
742 annot {
743 {
744 data
745 ftable {
746 {
747 id
748 local
749 id 9 ,
750 data
751 cdregion {
752 frame one ,
753 code {
754 id 11 } } ,
755 product
756 whole
757 local
758 str "contig6_1" ,
759 location
760 int {
761 from 5 ,
762 to 766 ,
763 strand plus ,
764 id
765 local
766 str "contig6" } ,
767 qual {
768 {
769 qual "inference" ,
770 val "ab initio prediction:Prodigal:2.60" } } ,
771 xref {
772 {
773 data
774 gene {
775 locus-tag "PROKKA_00005" } } } } } } } } ,
776 seq {
777 id {
778 local
779 str "contig7" } ,
780 descr {
781 source {
782 org {
783 taxname "Genus species" ,
784 orgname {
785 mod {
786 {
787 subtype strain ,
788 subname "strain" } } ,
789 gcode 11 } } } ,
790 molinfo {
791 biomol genomic } ,
792 comment "Annotated using prokka 1.11 from
793 http://www.vicbioinformatics.com" ,
794 user {
795 type
796 str "NcbiCleanup" ,
797 data {
798 {
799 label
800 str "method" ,
801 data
802 str "SeriousSeqEntryCleanup" } ,
803 {
804 label
805 str "version" ,
806 data
807 int 8 } ,
808 {
809 label
810 str "month" ,
811 data
812 int 10 } ,
813 {
814 label
815 str "day" ,
816 data
817 int 11 } ,
818 {
819 label
820 str "year" ,
821 data
822 int 2016 } } } ,
823 create-date
824 std {
825 year 2016 ,
826 month 10 ,
827 day 11 } } ,
828 inst {
829 repr raw ,
830 mol dna ,
831 length 276 ,
832 seq-data
833 iupacna "TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAA
834 TGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGA
835 AGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGA
836 CGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA" } } } }