annotate test-data/out.sqn @ 8:392255fa7ab9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9a92d439f147a5cf2370e0686854911107de1144

Seq-entry ::= set {
  class genbank ,
  seq-set {
    seq {
      id {
        local
          str "contig1" } ,
      descr {
        source {
          org {
            taxname "Genus species" ,
            orgname {
              mod {
                {
                  subtype strain ,
                  subname "strain" } } ,
              gcode 11 } } } ,
        molinfo {
          biomol genomic } ,
        comment "Annotated using prokka 1.11 from
 http://www.vicbioinformatics.com" ,
        user {
          type
            str "NcbiCleanup" ,
          data {
            {
              label
                str "method" ,
              data
                str "SeriousSeqEntryCleanup" } ,
            {
              label
                str "version" ,
              data
                int 8 } ,
            {
              label
                str "month" ,
              data
                int 10 } ,
            {
              label
                str "day" ,
              data
                int 11 } ,
            {
              label
                str "year" ,
              data
                int 2016 } } } ,
        create-date
          std {
            year 2016 ,
            month 10 ,
            day 11 } } ,
      inst {
        repr raw ,
        mol dna ,
        length 350 ,
        seq-data
          iupacna "GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGA
AAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAG
AAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTGTCAAA
AACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACA
TTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC" } } ,
    set {
      class nuc-prot ,
      descr {
        source {
          org {
            taxname "Genus species" ,
            orgname {
              mod {
                {
                  subtype strain ,
                  subname "strain" } } ,
              gcode 11 } } } ,
        comment "Annotated using prokka 1.11 from
 http://www.vicbioinformatics.com" ,
        user {
          type
            str "NcbiCleanup" ,
          data {
            {
              label
                str "method" ,
              data
                str "SeriousSeqEntryCleanup" } ,
            {
              label
                str "version" ,
              data
                int 8 } ,
            {
              label
                str "month" ,
              data
                int 10 } ,
            {
              label
                str "day" ,
              data
                int 11 } ,
            {
              label
                str "year" ,
              data
                int 2016 } } } ,
        create-date
          std {
            year 2016 ,
            month 10 ,
            day 11 } } ,
      seq-set {
        seq {
          id {
            local
              str "contig2" } ,
          descr {
            molinfo {
              biomol genomic } } ,
          inst {
            repr raw ,
            mol dna ,
            length 840 ,
            seq-data
              iupacna "TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTG
AACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAG
ATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTT
GCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTT
ATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATG
GCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTA
CTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCGGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGG
CGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGG
TCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCG
TATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGT
TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGA
CTCTA" } } ,
        seq {
          id {
            local
              str "contig2_1" } ,
          descr {
            title "hypothetical protein PROKKA_00001 [Genus species]" ,
            molinfo {
              biomol peptide ,
              tech concept-trans } } ,
          inst {
            repr raw ,
            mol aa ,
            length 152 ,
            seq-data
              ncbieaa "MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCV
EACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTD
VLTDAEENVRQKLRAEGVM" } ,
          annot {
            {
              data
                ftable {
                  {
                    id
                      local
                        id 3 ,
                    data
                      prot {
                        name {
                          "hypothetical protein" } } ,
                    location
                      int {
                        from 0 ,
                        to 151 ,
                        id
                          local
                            str "contig2_1" } } } } } } ,
        seq {
          id {
            local
              str "contig2_2" } ,
          descr {
            title "hypothetical protein PROKKA_00002 [Genus species]" ,
            molinfo {
              biomol peptide ,
              tech concept-trans } } ,
          inst {
            repr raw ,
            mol aa ,
            length 38 ,
            seq-data
              ncbieaa "MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF" } ,
          annot {
            {
              data
                ftable {
                  {
                    id
                      local
                        id 4 ,
                    data
                      prot {
                        name {
                          "hypothetical protein" } } ,
                    location
                      int {
                        from 0 ,
                        to 37 ,
                        id
                          local
                            str "contig2_2" } } } } } } } ,
      annot {
        {
          data
            ftable {
              {
                id
                  local
                    id 1 ,
                data
                  cdregion {
                    frame one ,
                    code {
                      id 11 } } ,
                product
                  whole
                    local
                      str "contig2_1" ,
                location
                  int {
                    from 39 ,
                    to 497 ,
                    strand plus ,
                    id
                      local
                        str "contig2" } ,
                qual {
                  {
                    qual "inference" ,
                    val "ab initio prediction:Prodigal:2.60" } } ,
                xref {
                  {
                    data
                      gene {
                        locus-tag "PROKKA_00001" } } } } ,
              {
                id
                  local
                    id 2 ,
                data
                  cdregion {
                    frame one ,
                    code {
                      id 11 } } ,
                product
                  whole
                    local
                      str "contig2_2" ,
                location
                  int {
                    from 497 ,
                    to 613 ,
                    strand plus ,
                    id
                      local
                        str "contig2" } ,
                qual {
                  {
                    qual "inference" ,
                    val "ab initio prediction:Prodigal:2.60" } } ,
                xref {
                  {
                    data
                      gene {
                        locus-tag "PROKKA_00002" } } } } } } } } ,
    seq {
      id {
        local
          str "contig3" } ,
      descr {
        source {
          org {
            taxname "Genus species" ,
            orgname {
              mod {
                {
                  subtype strain ,
                  subname "strain" } } ,
              gcode 11 } } } ,
        molinfo {
          biomol genomic } ,
        comment "Annotated using prokka 1.11 from
 http://www.vicbioinformatics.com" ,
        user {
          type
            str "NcbiCleanup" ,
          data {
            {
              label
                str "method" ,
              data
                str "SeriousSeqEntryCleanup" } ,
            {
              label
                str "version" ,
              data
                int 8 } ,
            {
              label
                str "month" ,
              data
                int 10 } ,
            {
              label
                str "day" ,
              data
                int 11 } ,
            {
              label
                str "year" ,
              data
                int 2016 } } } ,
        create-date
          std {
            year 2016 ,
            month 10 ,
            day 11 } } ,
      inst {
        repr raw ,
        mol dna ,
        length 210 ,
        seq-data
          iupacna "CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATT
AAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTT
CTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA" } } ,
    set {
      class nuc-prot ,
      descr {
        source {
          org {
            taxname "Genus species" ,
            orgname {
              mod {
                {
                  subtype strain ,
                  subname "strain" } } ,
              gcode 11 } } } ,
        comment "Annotated using prokka 1.11 from
 http://www.vicbioinformatics.com" ,
        user {
          type
            str "NcbiCleanup" ,
          data {
            {
              label
                str "method" ,
              data
                str "SeriousSeqEntryCleanup" } ,
            {
              label
                str "version" ,
              data
                int 8 } ,
            {
              label
                str "month" ,
              data
                int 10 } ,
            {
              label
                str "day" ,
              data
                int 11 } ,
            {
              label
                str "year" ,
              data
                int 2016 } } } ,
        create-date
          std {
            year 2016 ,
            month 10 ,
            day 11 } } ,
      seq-set {
        seq {
          id {
            local
              str "contig4" } ,
          descr {
            molinfo {
              biomol genomic } } ,
          inst {
            repr raw ,
            mol dna ,
            length 1260 ,
            seq-data
              iupacna "ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCT
TAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGAC
TGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCA
TACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGA
CGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAAC
GTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGG
CACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGC
TTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGT
TTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTC
TCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTAT
TCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGAC
CGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAACGCC
GAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTTAGGAGTTTA
ATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGTTCTCACTTCTGTTACTCCA
GCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTATATTTTGATAGTTTGACGGTTAATGCT
GGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTGTCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCT
GATATTGCTTTTGATGCCGACCCTAAATTTTTTGC" } } ,
        seq {
          id {
            local
              str "contig4_1" } ,
          descr {
            title "hypothetical protein PROKKA_00003 [Genus species]" ,
            molinfo {
              biomol peptide ,
              tech concept-trans } } ,
          inst {
            repr raw ,
            mol aa ,
            length 287 ,
            seq-data
              ncbieaa "MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMG
LQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSV
PRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQW
YRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMTS" } ,
          annot {
            {
              data
                ftable {
                  {
                    id
                      local
                        id 6 ,
                    data
                      prot {
                        name {
                          "hypothetical protein" } } ,
                    location
                      int {
                        from 0 ,
                        to 286 ,
                        id
                          local
                            str "contig4_1" } } } } } } } ,
      annot {
        {
          data
            ftable {
              {
                id
                  local
                    id 5 ,
                data
                  cdregion {
                    frame one ,
                    code {
                      id 11 } } ,
                product
                  whole
                    local
                      str "contig4_1" ,
                location
                  int {
                    from 20 ,
                    to 883 ,
                    strand plus ,
                    id
                      local
                        str "contig4" } ,
                qual {
                  {
                    qual "inference" ,
                    val "ab initio prediction:Prodigal:2.60" } } ,
                xref {
                  {
                    data
                      gene {
                        locus-tag "PROKKA_00003" } } } } } } } } ,
    set {
      class nuc-prot ,
      descr {
        source {
          org {
            taxname "Genus species" ,
            orgname {
              mod {
                {
                  subtype strain ,
                  subname "strain" } } ,
              gcode 11 } } } ,
        comment "Annotated using prokka 1.11 from
 http://www.vicbioinformatics.com" ,
        user {
          type
            str "NcbiCleanup" ,
          data {
            {
              label
                str "method" ,
              data
                str "SeriousSeqEntryCleanup" } ,
            {
              label
                str "version" ,
              data
                int 8 } ,
            {
              label
                str "month" ,
              data
                int 10 } ,
            {
              label
                str "day" ,
              data
                int 11 } ,
            {
              label
                str "year" ,
              data
                int 2016 } } } ,
        create-date
          std {
            year 2016 ,
            month 10 ,
            day 11 } } ,
      seq-set {
        seq {
          id {
            local
              str "contig5" } ,
          descr {
            molinfo {
              biomol genomic } } ,
          inst {
            repr raw ,
            mol dna ,
            length 490 ,
            seq-data
              iupacna "CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTAT
GATGTTTATCCTTTGAATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCC
CGTACGCCGGGCAATAACGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGTT
TCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGCTATTGCTG
GCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCA
TTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCT
CTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG" } } ,
        seq {
          id {
            local
              str "contig5_1" } ,
          descr {
            title "hypothetical protein PROKKA_00004 [Genus species]" ,
            molinfo {
              biomol peptide ,
              tech concept-trans } } ,
          inst {
            repr raw ,
            mol aa ,
            length 43 ,
            seq-data
              ncbieaa "MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL" } ,
          annot {
            {
              data
                ftable {
                  {
                    id
                      local
                        id 8 ,
                    data
                      prot {
                        name {
                          "hypothetical protein" } } ,
                    location
                      int {
                        from 0 ,
                        to 42 ,
                        id
                          local
                            str "contig5_1" } } } } } } } ,
      annot {
        {
          data
            ftable {
              {
                id
                  local
                    id 7 ,
                data
                  cdregion {
                    frame one ,
                    code {
                      id 11 } } ,
                product
                  whole
                    local
                      str "contig5_1" ,
                location
                  int {
                    from 274 ,
                    to 405 ,
                    strand plus ,
                    id
                      local
                        str "contig5" } ,
                qual {
                  {
                    qual "inference" ,
                    val "ab initio prediction:Prodigal:2.60" } } ,
                xref {
                  {
                    data
                      gene {
                        locus-tag "PROKKA_00004" } } } } } } } } ,
    set {
      class nuc-prot ,
      descr {
        source {
          org {
            taxname "Genus species" ,
            orgname {
              mod {
                {
                  subtype strain ,
                  subname "strain" } } ,
              gcode 11 } } } ,
        comment "Annotated using prokka 1.11 from
 http://www.vicbioinformatics.com" ,
        user {
          type
            str "NcbiCleanup" ,
          data {
            {
              label
                str "method" ,
              data
                str "SeriousSeqEntryCleanup" } ,
            {
              label
                str "version" ,
              data
                int 8 } ,
            {
              label
                str "month" ,
              data
                int 10 } ,
            {
              label
                str "day" ,
              data
                int 11 } ,
            {
              label
                str "year" ,
              data
                int 2016 } } } ,
        create-date
          std {
            year 2016 ,
            month 10 ,
            day 11 } } ,
      seq-set {
        seq {
          id {
            local
              str "contig6" } ,
          descr {
            molinfo {
              biomol genomic } } ,
          inst {
            repr raw ,
            mol dna ,
            length 1960 ,
            seq-data
              iupacna "GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCAC
TTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCG
TGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGT
TGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAA
TGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAA
TGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCA
ACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAAT
CAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTC
TCATATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGG
TATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTC
TAGGAAATAACCGTCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGT
TCGTTCTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGA
GGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGCTCTT
GGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATGTTGACGGCCATAAGGCTGC
TTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGAATTGGCACAATGCTACAATGTGCTCCC
CCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGT
TACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAA
AGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTT
GATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATT
AGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGG
TCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCT
TCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAA
TCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGA
CGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGT
TGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATG
GAACAACTCACTAAAAACCAAGCTGTCGCTACT" } } ,
        seq {
          id {
            local
              str "contig6_1" } ,
          descr {
            title "hypothetical protein PROKKA_00005 [Genus species]" ,
            molinfo {
              biomol peptide ,
              tech concept-trans } } ,
          inst {
            repr raw ,
            mol aa ,
            length 253 ,
            seq-data
              ncbieaa "MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRDYLAAAFPELNA
WERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLAYQQKESTA
RVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNV
VTDAASGVVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK" } ,
          annot {
            {
              data
                ftable {
                  {
                    id
                      local
                        id 10 ,
                    data
                      prot {
                        name {
                          "hypothetical protein" } } ,
                    location
                      int {
                        from 0 ,
                        to 252 ,
                        id
                          local
                            str "contig6_1" } } } } } } } ,
      annot {
        {
          data
            ftable {
              {
                id
                  local
                    id 9 ,
                data
                  cdregion {
                    frame one ,
                    code {
                      id 11 } } ,
                product
                  whole
                    local
                      str "contig6_1" ,
                location
                  int {
                    from 5 ,
                    to 766 ,
                    strand plus ,
                    id
                      local
                        str "contig6" } ,
                qual {
                  {
                    qual "inference" ,
                    val "ab initio prediction:Prodigal:2.60" } } ,
                xref {
                  {
                    data
                      gene {
                        locus-tag "PROKKA_00005" } } } } } } } } ,
    seq {
      id {
        local
          str "contig7" } ,
      descr {
        source {
          org {
            taxname "Genus species" ,
            orgname {
              mod {
                {
                  subtype strain ,
                  subname "strain" } } ,
              gcode 11 } } } ,
        molinfo {
          biomol genomic } ,
        comment "Annotated using prokka 1.11 from
 http://www.vicbioinformatics.com" ,
        user {
          type
            str "NcbiCleanup" ,
          data {
            {
              label
                str "method" ,
              data
                str "SeriousSeqEntryCleanup" } ,
            {
              label
                str "version" ,
              data
                int 8 } ,
            {
              label
                str "month" ,
              data
                int 10 } ,
            {
              label
                str "day" ,
              data
                int 11 } ,
            {
              label
                str "year" ,
              data
                int 2016 } } } ,
        create-date
          std {
            year 2016 ,
            month 10 ,
            day 11 } } ,
      inst {
        repr raw ,
        mol dna ,
        length 276 ,
        seq-data
          iupacna "TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAA
TGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGA
AGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGA
CGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA" } } } }