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Use GALAXY_SLOTS for multithreading in Bowtie. Create symlinks instead of copying files. Specify in help that Bowtie is used to align the reads to the contigs. Add readme.rst .
author crs4
date Mon, 03 Mar 2014 11:28:41 -0500
parents 988d5a82291a
children
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Copyright © 2013-2014 CRS4 Srl. http://www.crs4.it/
Created by:
Gianmauro Cuccuru <gianmauro.cuccuru@crs4.it>
Nicola Soranzo <nicola.soranzo@crs4.it>

Permission is hereby granted, free of charge, to any person obtaining a
copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
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permit persons to whom the Software is furnished to do so, subject to
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The above copyright notice and this permission notice shall be included
in all copies or substantial portions of the Software.

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OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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