diff tool_dependencies.xml @ 1:386166019772 draft

Uploaded

--- a/tool_dependencies.xml	Wed Sep 11 12:51:21 2013 -0400
+++ b/tool_dependencies.xml	Tue Jan 07 04:48:50 2014 -0500
@@ -1,11 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
-  <package name="ssake" version="3.8">
+  <package name="ssake" version="3.8.1">
     <install version="1.0">
       <actions>
-        <action type="download_by_url" target_filename="ssake_v3-8.tar.gz">http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8/ssake_v3-8-tar.gz</action>
-        <!-- fix for Perl >= 5.16.0-->
-        <action type="shell_command">sed -i -e 's/require "getopts.pl"/use Getopt::Std/' -e 's/&amp;Getopts/getopts/' SSAKE tools/TQSfastq.pl</action>
+        <action type="download_by_url" target_filename="ssake_v3-8-1.tar.gz">http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8.1/ssake_v3.8.1-tar.gz</action>
         <action type="move_directory_files">
           <source_directory>.</source_directory>
           <destination_directory>$INSTALL_DIR</destination_directory>