Mercurial > repos > crs4 > taxonomy_krona_chart
changeset 7:73486cc6170e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/taxonomy_krona_chart commit 40d8aaf782f1693a435ec17abe81e81fa157f724
| author | iuc |
|---|---|
| date | Mon, 19 Feb 2018 06:29:08 -0500 |
| parents | d41b98e72c4c |
| children | c9f8fef1df74 |
| files | taxonomy_krona_chart.xml |
| diffstat | 1 files changed, 22 insertions(+), 2 deletions(-) [+] |
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--- a/taxonomy_krona_chart.xml Sat Aug 19 09:45:58 2017 -0400 +++ b/taxonomy_krona_chart.xml Mon Feb 19 06:29:08 2018 -0500 @@ -28,9 +28,9 @@ ]]></command> <inputs> <conditional name="type_of_data"> - <param name="type_of_data_selector" type="select" label="What is the type of your input data" help="Select between Galaxy Taxonomy and MetaPhlAn Text"> + <param name="type_of_data_selector" type="select" label="What is the type of your input data" help="Choose between Galaxy Taxonomy and generic table format (e.g. from MetaPhlAn or mothur)"> <option value="taxonomy" selected="True">Taxonomy</option> - <option value="text">MetaPhlAn</option> + <option value="text">Tabular</option> </param> <when value="taxonomy"> <param name="input" type="data" format="taxonomy" multiple="True" label="Input file" help="Select a taxonomy dataset" /> @@ -97,6 +97,26 @@ ----- +**Input format** + +*Tabular* input format should be a tab-delimited file with the first column containing a count +and the remaining columns describing the hierarchy. For example:: + + 2 Fats Saturated fat + 3 Fats Unsaturated fat Monounsaturated fat + 3 Fats Unsaturated fat Polyunsaturated fat + 13 Carbohydrates Sugars + 4 Carbohydrates Dietary fiber + 21 Carbohydrates + 5 Protein + 4 + +which would yield this `Krona plot`_. + +.. _Krona plot: https://marbl.github.io/Krona/examples/xml.krona.html + +----- + **License and citation** This Galaxy tool is Copyright © 2013-2014 `CRS4 Srl.`_ and is released under the `MIT license`_.