comparison repeatmodeler.xml @ 5:8661b2607b7e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmodeler commit 652ae30a67649b070efd62ba90159e079c5e7bd5

4:a9fb165808c8

    <command detect_errors="exit_code"><![CDATA[
BuildDatabase -name 'rmdb' '$input_file'

&&

## "RMBlast jobs will use 4 cores each"
pa=\$(( (\${GALAXY_SLOTS:-1}+3)/4 ))

&&

RepeatModeler -database 'rmdb' -threads \$pa
    ]]></command>
    <inputs>
        <param type="data" name="input_file" format="fasta" label="Input genome fasta"/>
    </inputs>
    <outputs>

5:8661b2607b7e

    <command detect_errors="exit_code"><![CDATA[
BuildDatabase -name 'rmdb' '$input_file'

&&

RepeatModeler -database 'rmdb' -threads \${GALAXY_SLOTS:-1}
    ]]></command>
    <inputs>
        <param type="data" name="input_file" format="fasta" label="Input genome fasta"/>
    </inputs>
    <outputs>