Mercurial > repos > csbl > repeatmodeler

diff repeatmodeler.xml @ 5:8661b2607b7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmodeler commit 652ae30a67649b070efd62ba90159e079c5e7bd5
author: iuc
date: Wed, 03 May 2023 09:31:16 +0000
parents: a9fb165808c8
children: 4a172d211285
--- a/repeatmodeler.xml	Thu Apr 20 08:49:13 2023 +0000
+++ b/repeatmodeler.xml	Wed May 03 09:31:16 2023 +0000
@@ -11,12 +11,7 @@
 
 &&
 
-## "RMBlast jobs will use 4 cores each"
-pa=\$(( (\${GALAXY_SLOTS:-1}+3)/4 ))
-
-&&
-
-RepeatModeler -database 'rmdb' -threads \$pa
+RepeatModeler -database 'rmdb' -threads \${GALAXY_SLOTS:-1}
     ]]></command>
     <inputs>
         <param type="data" name="input_file" format="fasta" label="Input genome fasta"/>
author	iuc
date	Wed, 03 May 2023 09:31:16 +0000
parents	a9fb165808c8
children	4a172d211285