Mercurial > repos > cstrittmatter > test_eurl_vtec_wgs_pt

annotate data/amrfinder/AMR_DNA-Escherichia @ 3:0cbed1c0a762 draft default tip

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planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
author cstrittmatter
date Tue, 28 Jan 2020 10:42:31 -0500
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3
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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1 >NC_000913.3@16S_ribosomal_RNA:4166659-4168201
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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2 aaattgaagagtttgatcatggctcagattgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaaga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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3 agcttgcttctttgctgacgagtggcggacgggtgagtaatgtctgggaaactgcctgatggagggggataactactgga
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4 aacggtagctaataccgcataacgtcgcaagaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatg
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cstrittmatter
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5 ggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatgaccagccacactgga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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6 actgagacacggtccagactcctacgggaggcagcagtggggaatattgcacaatgggcgcaagcctgatgcagccatgc
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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7 cgcgtgtatgaagaaggccttcgggttgtaaagtactttcagcggggaggaagggagtaaagttaatacctttgctcatt
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8 gacgttacccgcagaagaagcaccggctaactccgtgccagcagccgcggtaatacggagggtgcaagcgttaatcggaa
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9 ttactgggcgtaaagcgcacgcaggcggtttgttaagtcagatgtgaaatccccgggctcaacctgggaactgcatctga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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10 tactggcaagcttgagtctcgtagaggggggtagaattccaggtgtagcggtgaaatgcgtagagatctggaggaatacc
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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11 ggtggcgaaggcggccccctggacgaagactgacgctcaggtgcgaaagcgtggggagcaaacaggattagataccctgg
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12 tagtccacgccgtaaacgatgtcgacttggaggttgtgcccttgaggcgtggcttccggagctaacgcgttaagtcgacc
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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13 gcctggggagtacggccgcaaggttaaaactcaaatgaattgacgggggcccgcacaagcggtggagcatgtggtttaat
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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14 tcgatgcaacgcgaagaaccttacctggtcttgacatccacggaagttttcagagatgagaatgtgccttcgggaaccgt
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15 gagacaggtgctgcatggctgtcgtcagctcgtgttgtgaaatgttgggttaagtcccgcaacgagcgcaacccttatcc
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16 tttgttgccagcggtccggccgggaactcaaaggagactgccagtgataaactggaggaaggtggggatgacgtcaagtc
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17 atcatggcccttacgaccagggctacacacgtgctacaatggcgcatacaaagagaagcgacctcgcgagagcaagcgga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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18 cctcataaagtgcgtcgtagtccggattggagtctgcaactcgactccatgaagtcggaatcgctagtaatcgtggatca
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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19 gaatgccacggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagtgggttgcaaaagaagtaggt
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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20 agcttaaccttcgggagggcgcttaccactttgtgattcatgactggggtgaagtcgtaacaaggtaaccgtaggggaac
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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21 ctgcggttggatcacctccttac
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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22 >NC_000913.3@16S_ribosomal_RNA:3941808-3943350
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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23 aaattgaagagtttgatcatggctcagattgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaaac
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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24 agcttgctgtttcgctgacgagtggcggacgggtgagtaatgtctgggaaactgcctgatggagggggataactactgga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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25 aacggtagctaataccgcataacgtcgcaagaccaaagagggggaccttcgggcctcttgccatcagatgtgcccagatg
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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26 ggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatgaccagccacactgga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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27 actgagacacggtccagactcctacgggaggcagcagtggggaatattgcacaatgggcgcaagcctgatgcagccatgc
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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28 cgcgtgtatgaagaaggccttcgggttgtaaagtactttcagcggggaggaagggagtaaagttaatacctttgctcatt
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
cstrittmatter
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29 gacgttacccgcagaagaagcaccggctaactccgtgccagcagccgcggtaatacggagggtgcaagcgttaatcggaa
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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30 ttactgggcgtaaagcgcacgcaggcggtttgttaagtcagatgtgaaatccccgggctcaacctgggaactgcatctga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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31 tactggcaagcttgagtctcgtagaggggggtagaattccaggtgtagcggtgaaatgcgtagagatctggaggaatacc
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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32 ggtggcgaaggcggccccctggacgaagactgacgctcaggtgcgaaagcgtggggagcaaacaggattagataccctgg
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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33 tagtccacgccgtaaacgatgtcgacttggaggttgtgcccttgaggcgtggcttccggagctaacgcgttaagtcgacc
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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34 gcctggggagtacggccgcaaggttaaaactcaaatgaattgacgggggcccgcacaagcggtggagcatgtggtttaat
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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35 tcgatgcaacgcgaagaaccttacctggtcttgacatccacggaagttttcagagatgagaatgtgccttcgggaaccgt
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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36 gagacaggtgctgcatggctgtcgtcagctcgtgttgtgaaatgttgggttaagtcccgcaacgagcgcaacccttatcc
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
cstrittmatter
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37 tttgttgccagcggtccggccgggaactcaaaggagactgccagtgataaactggaggaaggtggggatgacgtcaagtc
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
cstrittmatter
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38 atcatggcccttacgaccagggctacacacgtgctacaatggcgcatacaaagagaagcgacctcgcgagagcaagcgga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
cstrittmatter
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39 cctcataaagtgcgtcgtagtccggattggagtctgcaactcgactccatgaagtcggaatcgctagtaatcgtggatca
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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40 gaatgccacggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagtgggttgcaaaagaagtaggt
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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41 agcttaaccttcgggagggcgcttaccactttgtgattcatgactggggtgaagtcgtaacaaggtaaccgtaggggaac
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42 ctgcggttggatcacctccttac
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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43 >NC_000913.3@16S_ribosomal_RNA:223771-225313
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44 aaattgaagagtttgatcatggctcagattgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaaga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
cstrittmatter
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45 agcttgcttctttgctgacgagtggcggacgggtgagtaatgtctgggaaactgcctgatggagggggataactactgga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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46 aacggtagctaataccgcataacgtcgcaagaccaaagagggggaccttcgggcctcttgccatcggatgtgcccagatg
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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47 ggattagctagtaggtggggtaacggctcacctaggcgacgatccctagctggtctgagaggatgaccagccacactgga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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48 actgagacacggtccagactcctacgggaggcagcagtggggaatattgcacaatgggcgcaagcctgatgcagccatgc
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49 cgcgtgtatgaagaaggccttcgggttgtaaagtactttcagcggggaggaagggagtaaagttaatacctttgctcatt
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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50 gacgttacccgcagaagaagcaccggctaactccgtgccagcagccgcggtaatacggagggtgcaagcgttaatcggaa
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51 ttactgggcgtaaagcgcacgcaggcggtttgttaagtcagatgtgaaatccccgggctcaacctgggaactgcatctga
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52 tactggcaagcttgagtctcgtagaggggggtagaattccaggtgtagcggtgaaatgcgtagagatctggaggaatacc
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53 ggtggcgaaggcggccccctggacgaagactgacgctcaggtgcgaaagcgtggggagcaaacaggattagataccctgg
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54 tagtccacgccgtaaacgatgtcgacttggaggttgtgcccttgaggcgtggcttccggagctaacgcgttaagtcgacc
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55 gcctggggagtacggccgcaaggttaaaactcaaatgaattgacgggggcccgcacaagcggtggagcatgtggtttaat
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56 tcgatgcaacgcgaagaaccttacctggtcttgacatccacagaactttccagagatggattggtgccttcgggaactgt
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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57 gagacaggtgctgcatggctgtcgtcagctcgtgttgtgaaatgttgggttaagtcccgcaacgagcgcaacccttatct
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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58 tttgttgccagcggtccggccgggaactcaaaggagactgccagtgataaactggaggaaggtggggatgacgtcaagtc
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59 atcatggcccttacgaccagggctacacacgtgctacaatggcgcatacaaagagaagcgacctcgcgagagcaagcgga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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60 cctcataaagtgcgtcgtagtccggattggagtctgcaactcgactccatgaagtcggaatcgctagtaatcgtggatca
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61 gaatgccacggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagtgggttgcaaaagaagtaggt
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62 agcttaaccttcgggagggcgcttaccactttgtgattcatgactggggtgaagtcgtaacaaggtaaccgtaggggaac
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63 ctgcggttggatcacctccttac
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64 >NC_004431.1@23S_ribosomal_RNA:237160-240064
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65 ggttaagcgactaagcgtacacggtggatgccctggcagtcagaggcgatgaaggacgtgctaatctgcgataagcgtcg
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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66 gtaaggtgatatgaaccgttataaccggcgatttccgaatggggaaacccagtgtgtttcgacacactatcattaactga
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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67 atccataggttaatgaggcgaaccgggggaactgaaacatctaagtaccccgaggaaaagaaatcaaccgagattccccc
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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68 agtagcggcgagcgaacggggaggagcccagagcctgaatcagtgtgtgtgttagtggaagcgtctggaaaggcgcgcga
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69 tacagggtgacagccccgtacacaaaaatgcacatgctgtgagctcgatgagtagggcgggacacgtggtatcctgtctg
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70 aatatggggggaccatcctccaaggctaaatactcctgactgaccgatagtgaaccagtaccgtgagggaaaggcgaaaa
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71 gaaccccggcgaggggagtgaaaaagaacctgaaaccgtgtacgtacaagcagtgggagcatgcttaggcgtgtgactgc
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72 gtaccttttgtataatgggtcagcgacttatattctgtagcaaggttaaccgaataggggagccgaagggaaaccgagtc
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73 ttaactgggcgttaagttgcagggtatagacccgaaacccggtgatctagccatgggcaggttgaaggttgggtaacact
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74 aactggaggaccgaaccgactaatgttgaaaaattagcggatgacttgtggctgggggtgaaaggccaatcaaaccggga
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75 gatagctggttctccccgaaagctatttaggtagcgcctcgtgaactcatctccgggggtagagcactgtttcggcaagg
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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76 gggtcatcccgacttaccaacccgatgcaaactgcgaataccggagaatgttatcacgggagacacacggcgggtgctaa
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77 cgtccgtcgngaagagggaaacaacccagaccgccagctaaggtcccaaagtcatggttaagtgggaaacgatgtgggaa
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78 ggcccagacagccaggatgttggcttagaagcagccatcatttaaagaaagcgtaatagctcactggtcgagtcggcctg
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79 cgcggaagatgtaacggggctaaaccatgcaccgaagctgcggcagcgacgcttatgcgttgttgggtaggggagcgttc
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80 tgtaagcctgtgaaggtgtactgtgaggtatgctggaggtatcagaagtgcgaatgctgacataagtaacgataaagcgg
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81 gtgaaaagcccgctcgccggaagaccaagggttcctgtccaacgttaatcggggcagggtgagtcgacccctaaggcgag
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82 gccgaaaggcgtagtcgatgggaaacaggttaatattcctgtacttggtgttactgcgaaggggggacggagaaggctat
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83 gttggccgggcgacggttgtcccggtttaagcgtgtaggctggttttccaggcaaatccggaaaatcaaggctgaggcgt
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84 gatgacgaggcactacggtgctgaagcaacaaatgccctgcttccaggaaaagcctctaagcatcaggtaacatcaaatc
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85 gtaccccaaaccgacacaggtggtcaggtagagaataccaaggcgcttgagagaactcgggtgaaggaactaggcaaaat
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86 ggtgccgtaacttcgggagaaggcacgctgatatgtaggtgaagcgacttgctcgtggagctgaaatcagtcgaagatac
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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87 cagctggctgcaactgtttattaaaaacacagcactgtgcaaacacgaaagtggacgtatacggtgtgacgcctgcccgg
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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88 tgccggaaggttaattgatggggttagcgcaagcgaagctcttgatcgaagccccggtaaacggcggccgtaactataac
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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89 ggtcctaaggtagcgaaattccttgtcgggtaagttccgacctgcacgaatggcgtaatgatggccaggctgtctccacc
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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90 cgagactcagtgaaattgaactcgctgtgaagatgcagtgtacccgcggcaagacggaaagaccccgtgaacctttacta
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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91 tagcttgacactgaacattgagccttgatgtgtaggataggtgggaggctttgaagtgtggacgccagtctgcatggagc
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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92 cgaccttgaaataccaccctttaatgtttgatgttctaacgttgacccgtaatccgggttgcggacagtgtctggtgggt
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93 agtttgactggggcggtctcctcctaaagagtaacggaggagcacgaaggttggctaatcctggtcggacatcaggaggt
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94 tagtgcaatggcataagccagcttgactgcgagcgtgacggcgcgagcaggtgcgaaagcaggtcatagtgatccggtgg
0cbed1c0a762 planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
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95 ttctgaatggaagggccatcgctcaacggataaaaggtactccggggataacaggctgataccgcccaagagttcatatc
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96 gacggcggtgtttggcacctcgatgtcggctcatcacatcctggggctgaagtaggtcccaagggtatggctgttcgcca
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97 tttaaagtggtacgcgagctgggtttagaacgtcgtgagacagttcggtccctatctgccgtgggcgctggagaactgag
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98 gggggctgctcctagtacgagaggaccggagtggacgcatcactggtgttcgggttgtcatgccaatggcactgcccggt
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99 agctaaatgcggaagagataagtgctgaaagcatctaagcacgaaacttgccccgagatgagttctccctgactccttga
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100 gggtcctgaaggaacgttgaagacgacgacgttgataggccgggtgtgtaagcgcagcgatgcgttgagctaaccggtac
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101 taatgaaccgtgaggcttaacctta
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102 >NZ_CP041538.1@ampC/blaEC_promoter_region:1149245-1149489
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103 tggctgctatcctgacagttgtcacgctgattggtgtcgttacaatctaacgcatcgccaatgtaaatccggcccgccta
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104 tggcgggccgttttgtatggaaaccagaccctatgttcaaaacgacgctctgcaccttattaattaccgcctcttgctcc
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105 acatttgccgcccctcaacaaatcaacgatattgtgcatcgcacaattaccccgcttatagagcaacaaaagatccccgg
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106 tatgg