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view metaphlan_to_phyloxml.xml @ 6:e951f9d38339 default tip

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Added metaphlan2krona
author Dannon Baker <dannonbaker@me.com>
date Tue, 08 Apr 2014 14:16:46 -0400
parents 73f082e9fa2d
children
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<tool id="meta_to_phylo" name="MetaPhlAn to PhyloXML" version="1.0.0">
  <description>converter</description>
  <command interpreter="python">metaphlan_to_phyloxml.py $input $output</command>
  <inputs>
    <param name="input" type="data" format="tabular" label="MetaPhlAn relative abundances"/>
  </inputs>
  <outputs>
    <data format="xml" name="output" label="${tool.name} on ${on_string}" /> 
  </outputs>
  <tests>
  </tests>
  <help>
This tool converts the results of metagonome profiling performed with MetaPhlAn from tabular to PhyloXML format. The tool accepts as input only the result of rel_ab analysis (profiling in terms of relative abundaces), not reads_map or clade_profiles analysis.
  </help>
</tool>