Mercurial > repos > daumsoft > tar
annotate tar_align/tar.sh @ 0:04d416dd3b59 draft default tip
Uploaded
| author | daumsoft |
|---|---|
| date | Wed, 18 Apr 2018 02:52:38 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 #!/bin/bash |
| 2 if [ "$#" -ne 2 ]; then echo "[usage:] tar.sh read_R1.fastq read_R2.fastq" | |
| 3 exit 1; | |
| 4 fi | |
| 5 | |
| 6 FASTQ_1=$1 | |
| 7 FASTQ_2=$2 | |
| 8 FASTQ_1_lnk="sample_R1.fastq" | |
| 9 FASTQ_2_lnk="sample_R2.fastq" | |
| 10 | |
| 11 ln -s $FASTQ_1 ./$FASTQ_1_lnk | |
| 12 ln -s $FASTQ_2 ./$FASTQ_2_lnk | |
| 13 | |
| 14 OUT_TAR_GZ=$3.tar.gz | |
| 15 | |
| 16 OUTPUT=./out | |
| 17 mkdir $OUTPUT | |
| 18 | |
| 19 $GALAXY_HOME/package/DAUMSOFT/RNA-seq/TAR/tar czlf $OUTPUT/sample.tar.gz $FASTQ_1_lnk $FASTQ_2_lnk | |
| 20 |