diff tar_align/tar.sh @ 0:04d416dd3b59 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tar_align/tar.sh	Wed Apr 18 02:52:38 2018 -0400
@@ -0,0 +1,20 @@
+#!/bin/bash 
+if [ "$#" -ne 2 ]; then echo "[usage:] tar.sh  read_R1.fastq  read_R2.fastq"
+ exit 1;
+fi
+
+FASTQ_1=$1
+FASTQ_2=$2
+FASTQ_1_lnk="sample_R1.fastq"
+FASTQ_2_lnk="sample_R2.fastq"
+
+ln -s $FASTQ_1 ./$FASTQ_1_lnk
+ln -s $FASTQ_2 ./$FASTQ_2_lnk
+
+OUT_TAR_GZ=$3.tar.gz
+
+OUTPUT=./out
+mkdir $OUTPUT
+
+$GALAXY_HOME/package/DAUMSOFT/RNA-seq/TAR/tar czlf $OUTPUT/sample.tar.gz  $FASTQ_1_lnk $FASTQ_2_lnk
+