annotate test-data/maf_to_fasta-in1.txt @ 0:be26293ade92 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genebed_maf_to_fasta/ commit 8d55cabcec17915d959f672ecacfa851df1f4ca4-dirty"

#name	chrom	strand	txStart	txEnd	cdsStart	cdsEnd	exonCount	exonStarts	exonEnds	proteinID	alignID
ENST00000331437.4	chr22	-	17116296	17121360	17119390	17121127	1	17116296,	17121360,	Q9BXQ6	uc002zmb.4
ENST00000441493.7	chr22	-	17787648	18024561	17790731	17906812	32	17787648,17790997,17791201,17808843,17810702,17816689,17817310,17821426,17822029,17822946,17827643,17831853,17841821,17864898,17865923,17871836,17885877,17887169,17887322,17889033,17891484,17893807,17895283,17896245,17896723,17899447,17900841,17901877,17902630,17904631,17906548,18024280,	17790916,17791071,17791301,17808937,17810813,17816784,17819129,17821509,17822170,17823060,17827781,17832107,17842017,17864986,17866012,17872023,17886051,17887232,17887435,17889230,17891632,17893904,17895410,17896361,17896981,17899548,17900997,17901979,17902747,17904839,17906886,18024561,	Q7RTP6	uc002zng.6
ENST00000610940.4	chr22	-	18912776	18936553	18913174	18936287	15	18912776,18913437,18916889,18918315,18919450,18919705,18921341,18922324,18922816,18923114,18925050,18925687,18930989,18936014,18936389,	18913362,18913526,18916988,18918491,18919597,18919798,18921423,18922404,18922933,18923179,18925200,18925722,18931198,18936327,18936553,	A0A087WWM6	uc002zok.5
ENST00000334029.6	chr22	-	18912781	18936451	18913174	18931147	14	18912781,18913437,18916889,18918315,18919450,18919705,18921341,18922324,18922816,18923114,18925050,18925687,18930989,18936389,	18913362,18913526,18916988,18918491,18919597,18919798,18921423,18922404,18922933,18923179,18925200,18925722,18931198,18936451,	E7EQL6	uc002zol.5
ENST00000382932.3	chr22	-	21028717	21032561	21029054	21031812	5	21028717,21029335,21029710,21030830,21032530,	21029230,21029444,21030351,21031852,21032561,	O43246	uc002zud.4
ENST00000607942.5	chr22	+	21632715	21635802	21633181	21635644	4	21632715,21633119,21634021,21634684,	21632827,21633253,21634570,21635802,	Q8IYX3	uc011aih.2
ENST00000292779.4	chr22	+	21632759	21637329	21633181	21637070	5	21632759,21633119,21634021,21634684,21636431,	21632827,21633253,21634570,21635266,21637329,	Q8IYX3	uc002zve.5
ENST00000302097.3	chr22	-	22513735	22520270	22514001	22515630	2	22513735,22520088,	22515701,22520270,	P59817	uc032qhw.1
ENST00000330377.3	chr22	-	23573124	23580290	23573265	23580190	3	23573124,23574966,23579984,	23573585,23575082,23580290,	P15814	uc002zxd.5
ENST00000335473.11	chr22	+	25742152	26031041	25761092	26027678	44	25742152,25760983,25763230,25768114,25770109,25770871,25772333,25777582,25780055,25781733,25785427,25797952,25823504,25826408,25828775,25832916,25835295,25843734,25846099,25847429,25851469,25868319,25874285,25876188,25877958,25890755,25891303,25895155,25898306,25902612,25903630,25908321,25910945,25921256,25946136,25947711,25950366,25952285,25955178,25992362,26003264,26004717,26026444,26030442,	25742293,25761131,25763389,25769428,25770176,25770984,25772510,25777781,25780198,25781834,25785491,25798097,25823678,25826499,25828968,25832997,25835443,25843894,25846283,25847652,25851579,25868385,25874414,25876332,25878048,25890875,25891412,25895280,25898461,25902736,25903831,25908432,25911050,25921409,25946250,25947828,25950450,25952423,25955364,25992493,26003309,26004855,26027690,26031041,	Q8IUG5	uc003abz.1
ENST00000407587.6	chr22	+	25742233	26030644	25761092	26027678	44	25742233,25760983,25763230,25768114,25770109,25770871,25772333,25777582,25780055,25781733,25785427,25797952,25823504,25826408,25828775,25832916,25835292,25843734,25846099,25847429,25851469,25868319,25874285,25876188,25877958,25890755,25891303,25895155,25898306,25902612,25903630,25908321,25910945,25921256,25946136,25947711,25950366,25952285,25955178,25992362,26003264,26004717,26026444,26030442,	25742293,25761131,25763389,25769428,25770176,25770984,25772510,25777781,25780198,25781834,25785491,25798097,25823678,25826499,25828968,25832997,25835443,25843894,25846283,25847652,25851579,25868385,25874414,25876332,25878048,25890875,25891412,25895280,25898461,25902736,25903831,25908432,25911050,25921409,25946250,25947828,25950450,25952423,25955364,25992493,26003309,26004855,26027690,26030644,	Q8IUG5	uc062cna.1
ENST00000302326.5	chr22	-	27748276	27801756	27750914	27800543	2	27748276,27796762,	27751096,27801756,	Q10571	uc003adj.4
ENST00000397906.6	chr22	-	27978013	28679865	27982220	28679723	23	27978013,27985248,27989877,27990788,27992586,27993286,27996134,27998539,28001373,28014247,28030225,28094079,28096189,28098914,28101170,28105278,28107061,28163091,28296197,28297579,28306495,28629551,28679621,	27983851,27985356,27990007,27990812,27992663,27993518,27996259,27999260,28001553,28014392,28030366,28094245,28096408,28099044,28101280,28105802,28108403,28163599,28296328,28297852,28306643,28629830,28679865,	Q96AY4	uc003adp.4
ENST00000354373.2	chr22	+	29438582	29442455	29438791	29442122	2	29438582,29441541,	29439164,29442455,	O75677	uc003afn.3
ENST00000310624.7	chr22	+	29480217	29491390	29480262	29490703	4	29480217,29483374,29485722,29488848,	29481145,29483574,29485847,29491390,	P12036	uc003afo.5
ENST00000327423.11	chr22	-	31681346	31750132	31685526	31738860	9	31681346,31688155,31701655,31703549,31704654,31712082,31725537,31738386,31749992,	31685803,31688227,31701762,31703721,31704726,31717291,31725610,31738911,31750132,	Q5THK1	uc003alp.6
ENST00000248983.8	chr22	-	32190434	32202451	32190771	32202451	4	32190434,32192901,32194344,32202332,	32191352,32193192,32194490,32202451,	O75678	uc062dmr.1
ENST00000626996.2	chr22	-	32190437	32202571	32193080	32202451	3	32190437,32192901,32202332,	32191352,32193192,32202571,	O75678	uc062dms.1
ENST00000400237.2	chr22	-	32190437	32203477	32190771	32202451	5	32190437,32192901,32194344,32202332,32202640,	32191352,32193192,32194490,32202550,32203477,	O75678	uc003amg.4
ENST00000652607.1	chr22	-	32190541	32205001	32190771	32202451	5	32190541,32192901,32194344,32202332,32204706,	32191352,32193192,32194490,32202550,32205001,	O75678	uc287jbr.1
ENST00000397468.5	chr22	+	32354884	32361161	32358158	32360832	3	32354884,32358153,32360251,	32354897,32358444,32361161,	O75679	uc010gwn.3
ENST00000249007.4	chr22	+	32357866	32361161	32358071	32360832	2	32357866,32360251,	32358444,32361161,	O75679	uc003amj.3
ENST00000249044.2	chr22	+	35717871	35729483	35717871	35728898	5	35717871,35720567,35726210,35728722,35729353,	35717926,35720654,35727194,35728904,35729483,	Q9BWW9	uc003aof.4
ENST00000349314.6	chr22	-	36140329	36160929	36141199	36160891	3	36140329,36145472,36160668,	36142058,36145599,36160929,	O95236	uc003aot.4
ENST00000424878.3	chr22	-	36141026	36149126	36141199	36149055	3	36141026,36145472,36149045,	36142058,36145599,36149126,	O95236	uc062dsb.1
ENST00000352371.5	chr22	-	36189128	36204833	36191074	36202036	5	36189128,36195310,36199329,36201992,36204627,	36191912,36195437,36199376,36202055,36204833,	Q9BPW4	uc032qnf.2
ENST00000616056.4	chr22	-	36189128	36204840	36191074	36201734	6	36189128,36195310,36199329,36201699,36201992,36204627,	36191912,36195437,36199376,36201888,36202055,36204840,	Q9BPW4	uc032qne.2
ENST00000422706.5	chr22	+	36253070	36267530	36254955	36266033	6	36253070,36254897,36257082,36257318,36261595,36265150,	36253219,36254999,36257136,36257407,36261722,36267530,	O14791	uc011amp.3
ENST00000426053.5	chr22	+	36253070	36267530	36254955	36266033	5	36253070,36254936,36257318,36261595,36265150,	36253219,36254999,36257407,36261722,36267530,	O14791	uc011amq.3
ENST00000319136.8	chr22	+	36253077	36267521	36253962	36266033	7	36253077,36253837,36254936,36257082,36257318,36261595,36265150,	36253219,36253991,36254999,36257136,36257407,36261722,36267521,	O14791	uc003ape.4
ENST00000397279.8	chr22	+	36253140	36267083	36254955	36266033	7	36253140,36254936,36257082,36257318,36261595,36265150,36266888,	36253219,36254999,36257136,36257407,36261722,36266107,36267083,	O14791	uc062dtj.1
ENST00000403662.8	chr22	+	36913627	36940439	36922207	36938502	14	36913627,36922035,36923243,36925986,36929401,36929638,36930374,36930672,36932764,36933831,36935350,36935629,36936548,36937376,	36913677,36922283,36923367,36926177,36929559,36929807,36930510,36930830,36932904,36933994,36935441,36935687,36936652,36940439,	P32927	uc003aqa.6
ENST00000610913.2	chr22	-	37204236	37212477	37206546	37207803	2	37204236,37211824,	37207839,37212477,	P32745	uc032qnp.3
ENST00000617123.1	chr22	-	37206479	37210965	37206546	37207803	2	37206479,37210544,	37207839,37210965,	P32745	uc021wos.3
ENST00000649765.1	chr22	+	37639668	37656119	37639787	37655684	18	37639668,37641125,37641373,37642538,37642894,37643097,37643643,37644636,37644869,37645364,37646817,37647266,37647440,37648318,37650151,37650541,37653778,37655271,	37639846,37641168,37641478,37642615,37643006,37643174,37643788,37644705,37644960,37645510,37646929,37647348,37647521,37648435,37650249,37650725,37653873,37656119,	Q9Y3L3	uc285thz.1
ENST00000644935.1	chr22	+	37697047	37776556	37701365	37772762	24	37697047,37697587,37701305,37710426,37713209,37715762,37723184,37733297,37734398,37738641,37740894,37751771,37754876,37755100,37755549,37757612,37759153,37765669,37768073,37769027,37769261,37771649,37772600,37773782,	37697089,37697696,37701479,37710566,37713411,37715934,37726503,37733412,37735442,37738719,37741032,37751828,37754984,37755190,37755659,37758138,37759264,37765817,37768176,37769187,37769375,37771736,37772764,37776556,	Q9H2D6	uc285tid.1
ENST00000320521.9	chr22	-	38078133	38083142	38078387	38082873	5	38078133,38080839,38081888,38082659,38083041,	38078704,38081679,38082032,38082881,38083142,	O95907	uc003auu.4
ENST00000359486.7	chr22	-	42160012	42215442	42168652	42215305	5	42160012,42168608,42169846,42179608,42209650,	42161358,42168736,42169896,42179702,42215442,	W5ZR30	uc003bcj.3
ENST00000335626.8	chr22	-	42161055	42215440	42161340	42215305	4	42161055,42169846,42179608,42209650,	42161358,42169896,42179702,42215440,	Q9UGU0	uc003bck.3
ENST00000642412.2	chr22	-	42692120	42720870	42692889	42693951	3	42692120,42695490,42720796,	42693997,42695631,42720870,	Q9NPC4	uc285tjf.2
ENST00000249005.3	chr22	-	42692121	42695633	42692889	42693951	2	42692121,42695490,	42693997,42695633,	Q9NPC4	uc062ewl.2
ENST00000253255.7	chr22	-	46255662	46263343	46256560	46263322	1	46255662,	46263343,	Q9NTG1	uc003bhh.5
ENST00000262738.7	chr22	-	46360833	46537170	46363177	46537170	35	46360833,46363995,46364511,46365230,46365585,46366385,46366992,46367728,46369178,46369691,46372882,46377060,46378590,46380787,46381845,46384542,46386401,46389289,46390391,46391185,46391632,46394141,46396604,46397673,46398523,46399716,46408995,46409754,46410397,46411601,46433392,46436173,46439188,46463706,46533626,	46363187,46364251,46364736,46365380,46365689,46366480,46367118,46367855,46369258,46369804,46373057,46377261,46378717,46380955,46382050,46384686,46386585,46389499,46390486,46391287,46391816,46394262,46396746,46397848,46398637,46399902,46409162,46409880,46410561,46411759,46433481,46436289,46439411,46464345,46537170,	Q9NYQ6	uc003bhw.1
ENST00000216268.6	chr22	+	49853843	49890080	49883662	49887178	2	49853843,49883333,	49853989,49890080,	O75132	uc003bix.4