Mercurial > repos > davidecangelosi > pipe_t

diff pipe-t.R @ 22:822dc9b96b3e draft

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planemo upload for repository https://github.com/igg-molecular-biology-lab/pipe-t.git commit 0632aecba2d189f11add8f4b7e1ce6bca2c564a0
author davidecangelosi
date Wed, 29 May 2019 06:13:55 -0400
parents 1e3113e565db
children 465e643e1ea1
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--- a/pipe-t.R	Wed May 29 05:58:58 2019 -0400
+++ b/pipe-t.R	Wed May 29 06:13:55 2019 -0400
@@ -570,7 +570,7 @@
   res = 300,            # 300 pixels per inch
   pointsize = 8)
  
-  plotCtBoxes(xFilter, ylim=c(min(exprs(xFilter), na.rm = TRUE),max(exprs(xFilter), na.rm = TRUE)), cex.lab=3, cex.axis = 2,stratify=NULL, xlab = "Samples", ylab="Ct", mar = c(8,8,8,8), names=as.character(seq(1, ncol(xFilter), 1)))       # smaller font size
+  plotCtBoxes(xFilter, ylim=c(dcCtmin,dcCtmax), cex.lab=3, cex.axis = 2,stratify=NULL, xlab = "Samples", ylab="Ct", mar = c(8,8,8,8), names=as.character(seq(1, ncol(xFilter), 1)))       # smaller font size
 dev.off()
 
 #write.table(exprs(xFilter), file=x, quote=FALSE,  row.names=TRUE, col.names=TRUE,sep = "\t")