comparison PKG-INFO @ 7:8d676bbd1f2d

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author davidmurphy
date Mon, 16 Jan 2012 07:03:36 -0500
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6:4a4aca3d57c9 7:8d676bbd1f2d
1 Metadata-Version: 1.0
2 Name: weblogo
3 Version: 3.0
4 Summary: WebLogo3 : Sequence Logos Redrawn
5 Home-page: http://code.google.com/p/weblogo/
6 Author: Gavin Crooks
7 Author-email: gec@threeplusone.com
8 License: UNKNOWN
9 Download-URL: http://weblogo.googlecode.com/svn/dist/weblogo-3.0.tar.gz
10 Description:
11 WebLogo (http://code.google.com/p/weblogo/) is a tool for creating sequence
12 logos from biological sequence alignments. It can be run on the command line,
13 as a standalone webserver, as a CGI webapp, or as a python library.
14
15 The main WebLogo webserver is located at http://bespoke.lbl.gov/weblogo/
16
17 Please consult the manual for installation instructions and more information:
18 (Also located in the weblogolib/htdocs subdirectory.)
19
20 http://bespoke.lbl.gov/weblogo/manual.html
21
22 For help on the command line interface run
23 ./weblogo --help
24
25 To build a simple logo run
26 ./weblogo < cap.fa > logo0.eps
27
28 To run as a standalone webserver at localhost:8080
29 ./weblogo --server
30
31 To create a logo in python code:
32 >>> from weblogolib import *
33 >>> fin = open('cap.fa')
34 >>> seqs = read_seq_data(fin)
35 >>> data = LogoData.from_seqs(seqs)
36 >>> options = LogoOptions()
37 >>> options.title = "A Logo Title"
38 >>> format = LogoFormat(data, options)
39 >>> fout = open('cap.eps', 'w')
40 >>> eps_formatter( data, format, fout)
41
42
43 -- Distribution and Modification --
44 This package is distributed under the new BSD Open Source License.
45 Please see the LICENSE.txt file for details on copyright and licensing.
46 The WebLogo source code can be downloaded from
47 http://code.google.com/p/weblogo/
48
49 WebLogo requires Python 2.3, 2.4 or 2.5, the corebio python toolkit for
50 computational biology (http://code.google.com/p/corebio), and the python
51 array package 'numpy' (http://www.scipy.org/Download)
52
53 Platform: UNKNOWN
54 Classifier: Development Status :: 5 - Production/Stable
55 Classifier: Intended Audience :: Science/Research
56 Classifier: License :: OSI Approved :: BSD License
57 Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
58 Classifier: Programming Language :: Python
59 Classifier: Natural Language :: English
60 Classifier: Operating System :: OS Independent
61 Classifier: Topic :: Software Development :: Libraries
62 Classifier: Topic :: Software Development :: Libraries :: Python Modules