Mercurial > repos > davidvanzessen > argalaxy_tools

annotate report_clonality/naive_cdr3_char.htm @ 58:4c6df851e262 draft default tip

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"planemo upload commit 1a7731bb4fe2e80fb1fdc88121783068af3edb08"
author rhpvorderman
date Fri, 21 Apr 2023 10:04:39 +0000
parents 81b3eb11ed2c
children
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1 <html>
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3 <head>
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4 <meta http-equiv=Content-Type content="text/html; charset=UTF-8">
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5 <meta name=Generator content="Microsoft Word 14 (filtered)">
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6 <style>
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7 <!--
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8 /* Font Definitions */
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9 @font-face
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10 {font-family:Calibri;
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11 panose-1:2 15 5 2 2 2 4 3 2 4;}
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12 /* Style Definitions */
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13 p.MsoNormal, li.MsoNormal, div.MsoNormal
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14 {margin-top:0in;
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15 margin-right:0in;
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16 margin-bottom:10.0pt;
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18 line-height:115%;
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19 font-size:11.0pt;
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20 font-family:"Calibri","sans-serif";}
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21 .MsoChpDefault
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22 {font-family:"Calibri","sans-serif";}
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23 .MsoPapDefault
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24 {margin-bottom:10.0pt;
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25 line-height:115%;}
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26 @page WordSection1
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27 {size:8.5in 11.0in;
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28 margin:1.0in 1.0in 1.0in 1.0in;}
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29 div.WordSection1
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30 {page:WordSection1;}
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31 p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing
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32 {mso-style-priority:1;
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33 mso-style-unhide:no;
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34 mso-style-qformat:yes;
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35 margin:0in;
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36 margin-bottom:.0001pt;
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37 mso-pagination:widow-orphan;
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38 font-size:11.0pt;
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39 font-family:"Calibri","sans-serif";
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40 mso-fareast-font-family:"Times New Roman";
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41 mso-fareast-theme-font:minor-fareast;
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42 mso-bidi-font-family:"Times New Roman";}
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43 -->
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44 </style>
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45
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46 </head>
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47
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48 <body lang=EN-US>
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49
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50 <div class=WordSection1>
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51
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52 <p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt;
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53 text-align:justify;line-height:normal'><b><u><span style='font-size:12.0pt;
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54 font-family:"Times New Roman","serif"'>CDR3 characteristics tab</span></u></b></p>
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55
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56 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
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57 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
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58 font-family:"Times New Roman","serif"'>This tab gives information on the
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59 different characteristics of the CDR3.</span></p>
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60
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61 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
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62 text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
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63 12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p>
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64
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65 <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
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66 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
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67 font-family:"Times New Roman","serif"'>length distribution of CDR3</span></u></p>
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68
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69 <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
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70 text-align:justify;line-height:normal'><span style='font-size:12.0pt;
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71 font-family:"Times New Roman","serif"'>Graph visualizing for each donor the
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72 distribution of the CDR3 length in amino acids between all sequences.</span></p>
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73
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74 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
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75 text-align:justify;line-height:normal'><u><span style='font-size:12.0pt;
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76 font-family:"Times New Roman","serif"'>Amino acid composition of CDR3</span></u></p>
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77
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78 <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
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79 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
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80 font-family:"Times New Roman","serif"'>Bar graph visualizing for each donor how
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81 frequent each amino acid is used in the CDR3 of all sequences. The red colour
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82 in the background indicate positively charged amino acids, and the blue colour
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83 in the background indicate negatively charged amino acids. The amino acids are
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84 ordered from hydrophilic (left) to hydrophobic (right). </span></p>
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85
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86 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt;
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87 text-align:justify;line-height:normal'><b><span lang=EN-GB style='font-size:
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88 12.0pt;font-family:"Times New Roman","serif"'>Table</span></b></p>
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89
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90 <p class=MsoNoSpacing style='margin-bottom:0in;margin-bottom:.0001pt;
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91 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
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92 font-family:"Times New Roman","serif"'>Table showing for each donor the median
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93 CDR3 length.</span></p>
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94
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95 <p class=MsoNormal><span lang=EN-GB>&nbsp;</span></p>
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96
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97 </div>
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98
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99 </body>
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100
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101 </html>