Mercurial > repos > davidvanzessen > argalaxy_tools

annotate report_clonality/naive_gene_freq.htm @ 58:4c6df851e262 draft default tip

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"planemo upload commit 1a7731bb4fe2e80fb1fdc88121783068af3edb08"
author rhpvorderman
date Fri, 21 Apr 2023 10:04:39 +0000
parents 81b3eb11ed2c
children
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1 <html>
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3 <head>
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4 <meta http-equiv=Content-Type content="text/html; charset=UTF-8">
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5 <meta name=ProgId content=Word.Document>
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6 <meta name=Generator content="Microsoft Word 14">
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7 <meta name=Originator content="Microsoft Word 14">
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8 <link rel=File-List href="Gene%20frequencies%20tab_files/filelist.xml">
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9 <link rel=themeData href="Gene%20frequencies%20tab_files/themedata.thmx">
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10 <style>
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11 <!--
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12 /* Font Definitions */
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13 @font-face
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14 {font-family:Calibri;
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15 panose-1:2 15 5 2 2 2 4 3 2 4;
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16 mso-font-charset:0;
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17 mso-generic-font-family:swiss;
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18 mso-font-pitch:variable;
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19 mso-font-signature:-536870145 1073786111 1 0 415 0;}
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20 /* Style Definitions */
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21 p.MsoNormal, li.MsoNormal, div.MsoNormal
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29 line-height:115%;
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31 font-size:11.0pt;
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32 font-family:"Calibri","sans-serif";
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33 mso-fareast-font-family:"Times New Roman";
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34 mso-fareast-theme-font:minor-fareast;
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36 p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing
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37 {mso-style-priority:1;
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43 font-size:11.0pt;
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44 font-family:"Calibri","sans-serif";
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47 mso-bidi-font-family:"Times New Roman";}
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49 {mso-style-name:msochpdefault;
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57 font-family:"Calibri","sans-serif";
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58 mso-fareast-font-family:"Times New Roman";
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59 mso-fareast-theme-font:minor-fareast;
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60 mso-bidi-font-family:"Times New Roman";}
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62 {mso-style-name:msopapdefault;
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71 font-family:"Times New Roman","serif";
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95 </style>
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97 <style>
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112 mso-pagination:widow-orphan;
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113 font-size:10.0pt;
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114 font-family:"Calibri","sans-serif";}
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115 </style>
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116 <![endif]--><!--[if gte mso 9]><xml>
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117 <o:shapedefaults v:ext="edit" spidmax="1026"/>
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118 </xml><![endif]--><!--[if gte mso 9]><xml>
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119 <o:shapelayout v:ext="edit">
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120 <o:idmap v:ext="edit" data="1"/>
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121 </o:shapelayout></xml><![endif]-->
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122 </head>
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123
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124 <body lang=EN-US style='tab-interval:.5in'>
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125
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126 <div class=WordSection1>
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127
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128 <p class=MsoNoSpacing style='text-align:justify'><b><u><span lang=EN-GB
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129 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
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130 EN-GB'>Gene frequencies tab</span></u></b></p>
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131
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132 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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133 justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
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134 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>This tab gives
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135 information on the frequency of V, D and J gene usage. <o:p></o:p></span></p>
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136
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137 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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138 justify;line-height:normal'><o:p>&nbsp;</o:p></p>
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139
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140 <p class=MsoNoSpacing style='text-align:justify'><b><span lang=EN-GB
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141 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
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142 EN-GB'>Graphs</span></b></p>
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143
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144 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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145 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
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146 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Distribution of
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147 V gene families<o:p></o:p></span></u></p>
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148
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149 <p class=MsoNoSpacing style='text-align:justify'><a name="OLE_LINK121"></a><a
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150 name="OLE_LINK123"></a><a name="OLE_LINK122"></a><span style='mso-bookmark:
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151 OLE_LINK121'><span lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif";
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152 mso-ansi-language:EN-GB'>Bar graph showing the frequency of V gene family usage
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153 in all uploaded donors. </span></span><span lang=EN-GB style='font-size:12.0pt;
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154 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
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155
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156 <p class=MsoNoSpacing style='text-align:justify'><o:p>&nbsp;</o:p></p>
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157
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158 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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159 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
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160 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Relative
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161 frequency of V gene usage<o:p></o:p></span></u></p>
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162
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163 <p class=MsoNoSpacing style='text-align:justify'><a name="OLE_LINK124"></a><a
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164 name="OLE_LINK126"></a><a name="OLE_LINK125"></a><span style='mso-bookmark:
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165 OLE_LINK124'><span lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif";
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166 mso-ansi-language:EN-GB'>Bar graph showing the frequency of V genes in all
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167 uploaded donors. The order of the V genes on the x-axis can be altered by
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168 altering the “<span style='color:black;background:white'>Order of V(D)J genes
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169 in graphs” filter on the main page of the Immune repertoire pipeline.</span></span></span><span
54
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170 lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif";
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171 color:black;background:white;mso-ansi-language:EN-GB'><o:p></o:p></span></p>
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172
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173 <p class=MsoNoSpacing style='text-align:justify'><o:p>&nbsp;</o:p></p>
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174
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175 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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176 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
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177 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Relative
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178 frequency of D gene usage<o:p></o:p></span></u></p>
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179
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180 <p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB
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181 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
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182 EN-GB'>Bar graph showing the frequency of D genes in all uploaded donors. The
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183 order of the D genes on the x-axis can be altered by altering the “<span
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184 style='color:black;background:white'>Order of V(D)J genes in graphs” filter on
54
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185 the main page of the Immune repertoire pipeline.<o:p></o:p></span></span></p>
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186
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187 <p class=MsoNoSpacing style='text-align:justify'><o:p>&nbsp;</o:p></p>
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188
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189 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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190 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
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191 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Relative
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192 frequency of J gene usage<o:p></o:p></span></u></p>
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193
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194 <p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB
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195 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
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196 EN-GB'>Bar graph showing the frequency of J genes in all uploaded donors. The
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197 order of the J genes on the x-axis can be altered by altering the “<span
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198 style='color:black;background:white'>Order of V(D)J genes in graphs” filter on
54
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199 the main page of the Immune repertoire pipeline.<o:p></o:p></span></span></p>
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200
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201 <p class=MsoNoSpacing style='text-align:justify'><o:p>&nbsp;</o:p></p>
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202
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203 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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204 justify;line-height:normal'><u><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'>D
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205 reading frame<o:p></o:p></span></u></p>
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206
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207 <p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB
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208 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
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209 EN-GB'>Bar graph visualizing the frequency by which each D reading frame is
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210 used in each donor.</span></p>
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211
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212 </div>
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213
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214 </body>
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215
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rhpvorderman
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diff changeset
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