annotate report_clonality/naive_junction.htm @ 28:798b62942b4b draft

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author davidvanzessen
date Wed, 01 Mar 2017 10:41:30 -0500
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136 <p class=MsoNormal style='text-align:justify'><b><u><span style='font-size:
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137 12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Junction
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138 analysis tab </span></u></b></p>
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139
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140 <p class=MsoNormal style='text-align:justify'><b><span style='font-size:12.0pt;
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141 line-height:115%;font-family:"Times New Roman","serif"'>Tables:</span></b></p>
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142
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143 <p class=MsoNormal style='text-align:justify'><span style='font-size:12.0pt;
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144 line-height:115%;font-family:"Times New Roman","serif"'>The unique
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145 rearrangements are separated in sequences that contain <span class=GramE>both a</span>
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146 V, D and J gene and sequences that contain only a V and J gene.</span></p>
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147
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148 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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149 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
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150 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Productive mean
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151 tables<o:p></o:p></span></u></p>
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152
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153 <p class=MsoNormal style='text-align:justify'><span class=GramE><span
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154 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
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155 for each donor the number of productive sequences and the mean number of
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156 deletions, N-nucleotides and P-nucleotides.</span></span><span
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157 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
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158 For explanation about the different deletions and N and P nucleotides see
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159 figure above. </span></p>
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160
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161 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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162 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
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163 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Unproductive
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164 mean table<o:p></o:p></span></u></p>
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165
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166 <p class=MsoNormal style='text-align:justify'><span class=GramE><span
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167 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
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168 for each donor the number of unproductive sequences and the mean number of
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169 deletions, N-nucleotides and P-nucleotides.</span></span><span
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170 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
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171 For explanation about the different deletions and N and P nucleotides see
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172 figure above. </span></p>
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173
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176 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Productive
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177 median table<o:p></o:p></span></u></p>
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178
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179 <p class=MsoNormal style='text-align:justify'><span class=GramE><span
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180 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
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181 for each donor the number of productive sequences and the median number of
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182 deletions, N-nucleotides and P-nucleotides.</span></span><span
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183 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
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184 For explanation about the different deletions and N and P nucleotides see
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185 figure above. </span></p>
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186
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187 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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188 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
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189 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Unproductive
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190 median table<o:p></o:p></span></u></p>
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191
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192 <p class=MsoNormal style='text-align:justify'><span class=GramE><span
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193 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
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194 for each donor the number of unproductive sequences and the median number of
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195 deletions, N-nucleotides and P-nucleotides.</span></span><span
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196 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
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197 For explanation about the different deletions and N and P nucleotides see
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198 figure above. </span></p>
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199
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200 <p class=MsoNormal>&nbsp;</p>
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201
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202 </div>
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203
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204 </body>
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205
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206 </html>